View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21163_low_84 (Length: 233)
Name: NF21163_low_84
Description: NF21163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21163_low_84 |
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Alignment Details
Target: chr8 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 17 - 208
Target Start/End: Original strand, 11488845 - 11489040
Alignment:
| Q |
17 |
tggagcatgttattattgtcatgattcttcttgtaaaaatgtttatat---ttgttaaatattcttattcctataaacagttgttgaatagagttttaca |
113 |
Q |
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| T |
11488845 |
tggagcatgttatttttatcatgattcttcttgtaaaaatgtttatataatttgttaaatattcttattcctatatacatttgttgaatagagttttaca |
11488944 |
T |
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| Q |
114 |
tacagtatttcctttcttcaaaatccaaaagttaatcctggttgagagcttaagg-taagttttcttctaatattggtgaaaattgtgtattttgc |
208 |
Q |
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| T |
11488945 |
tacagtatctcctttcttcaaaatgctgaagttaatcctggttgagagcttaaggttaagttttgttctaatattgatgaaaattgtatattttgc |
11489040 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 130
Target Start/End: Original strand, 9842631 - 9842699
Alignment:
| Q |
58 |
tttatatttgttaaatattcttattcctataaacagttgttgaatagagttttacatacagtatttcctttct |
130 |
Q |
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| T |
9842631 |
tttatctttgttaaaaattcttgttcctataaacatttgttgaatag----ttacatacagtacgtcctttct |
9842699 |
T |
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