View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21163_low_88 (Length: 227)
Name: NF21163_low_88
Description: NF21163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21163_low_88 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 164; Significance: 8e-88; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 33 - 227
Target Start/End: Complemental strand, 32183257 - 32183063
Alignment:
| Q |
33 |
ctaatctaacaactaactactaatatttgccattcnnnnnnnnngtttaggtctgaaaaggtaccttcacttgaatctgcaagtatttaacatagtcaat |
132 |
Q |
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| T |
32183257 |
ctaatctaacaactaactactaatatttgccattcaaaaaaatagtttaggtctgaaaaggtaccttcacttgaatctgcaagtatttaacatagtcaat |
32183158 |
T |
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| Q |
133 |
gatatcatccaatatgtaagcttgactaccctgcaaattaaaattcaacgtatatgagctacttaaatttggtcccaaaaaattagctacttaaa |
227 |
Q |
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| T |
32183157 |
gatatcatccaatatgtaagcttgactaccctgcaaattaaaattcaacatatatgagctacttaaatttggtcccaaaaaattagctacttaaa |
32183063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 66
Target Start/End: Original strand, 32398798 - 32398831
Alignment:
| Q |
33 |
ctaatctaacaactaactactaatatttgccatt |
66 |
Q |
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|||||||||||||||| ||||||||||||||||| |
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| T |
32398798 |
ctaatctaacaactaattactaatatttgccatt |
32398831 |
T |
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