View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21163_low_89 (Length: 227)
Name: NF21163_low_89
Description: NF21163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21163_low_89 |
 | |
|
| [»] chr6 (30 HSPs) |
| |
|
| [»] scaffold0288 (1 HSPs) |
| |
|
| [»] scaffold0199 (1 HSPs) |
| |
|
| [»] chr8 (2 HSPs) |
| |
|
| [»] scaffold0475 (1 HSPs) |
| | |
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Alignment Details
Target: chr6 (Bit Score: 173; Significance: 4e-93; HSPs: 30)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 39 - 227
Target Start/End: Original strand, 4618692 - 4618880
Alignment:
| Q |
39 |
aaaccatctaaggcatttggacctcttgatttgagcaagcgtttgtgattgtattcagtgttaacaaaggttatgtgaaagcctctaaggtgaagaagct |
138 |
Q |
| |
|
|||||||| || || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4618692 |
aaaccatcaaaagcctttggacctcttgatttgagcaagcgtttgtgattgtattcggtgttaacaaaggttatgtgaaagcctctaaggtgaagaagct |
4618791 |
T |
|
| Q |
139 |
ttgctagtttgaacaatggattgatatggccttgaactggatatggaatcatcacaacatgtggttttctgtttgcaaagtttcccatt |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4618792 |
ttgctagtttgaacaatggattgatatggccttgaactggatatggaatcatcacaacatgtggttttctgtttgcaaagtttcccatt |
4618880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 4603469 - 4603689
Alignment:
| Q |
7 |
catctgggattgtttcgaagctaaaatcagtcaaaccatctaaggcatttggacctcttgatttgagcaagcgtttgtgattgtattcagtgttaacaaa |
106 |
Q |
| |
|
|||||||||||||||| |||||||||||||| || || ||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||| ||||| |
|
|
| T |
4603469 |
catctgggattgtttcaaagctaaaatcagtgaagccgtctaaggcattaggacctcttgatttgagcaaacgtttgtgattgtattcggtgttgacaaa |
4603568 |
T |
|
| Q |
107 |
ggttatgtgaaagcctctaaggtgaagaagctttgctagtttgaacaatggattgatatggccttgaactggatatggaatcatcacaacatgtggtttt |
206 |
Q |
| |
|
|||||||||||| ||||||||||||| || ||||||||||| |||| |||||||||||||||||||| |||||||||||||| |||| ||||| ||||| |
|
|
| T |
4603569 |
ggttatgtgaaatcctctaaggtgaaatagttttgctagtttcaacattggattgatatggccttgaagtggatatggaatcaacacagcatgttgtttt |
4603668 |
T |
|
| Q |
207 |
ctgtttgcaaagtttcccatt |
227 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
4603669 |
ctgtttgcaaagtttcccatt |
4603689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 7 - 226
Target Start/End: Original strand, 4594369 - 4594588
Alignment:
| Q |
7 |
catctgggattgtttcgaagctaaaatcagtcaaaccatctaaggcatttggacctcttgatttgagcaagcgtttgtgattgtattcagtgttaacaaa |
106 |
Q |
| |
|
||||||| || ||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||| |
|
|
| T |
4594369 |
catctggtatggtttcaaagctaaaaccagggaaaccatctaaggcatttggacctcttgatttgagcaaacgtttatgattgtattcagtgttgacaaa |
4594468 |
T |
|
| Q |
107 |
ggttatgtgaaagcctctaaggtgaagaagctttgctagtttgaacaatggattgatatggccttgaactggatatggaatcatcacaacatgtggtttt |
206 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||| ||||||||||||||||| ||||| ||||||| |||| |||||||| |||| ||||||||||| |
|
|
| T |
4594469 |
ggttatgtgaaatcctctaaggtgaagaagttttgcaagtttgaacaatggatttatatgtccttgaagtggagctggaatcaacacagcatgtggtttt |
4594568 |
T |
|
| Q |
207 |
ctgtttgcaaagtttcccat |
226 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
4594569 |
ctgtttgcaaagtttcccat |
4594588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 28 - 217
Target Start/End: Original strand, 4507291 - 4507480
Alignment:
| Q |
28 |
taaaatcagtcaaaccatctaaggcatttggacctcttgatttgagcaagcgtttgtgattgtattcagtgttaacaaaggttatgtgaaagcctctaag |
127 |
Q |
| |
|
|||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |
|
|
| T |
4507291 |
taaaatcagtgaaaccatcaaaggcattttcacctcttgatttgagcaagcgtttgtgattgtattcggtgttaacaaaggttatgtgaaagcctcgaag |
4507390 |
T |
|
| Q |
128 |
gtgaagaagctttgctagtttgaacaatggattgatatggccttgaactggatatggaatcatcacaacatgtggttttctgtttgcaaa |
217 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||| |||||||| |
|
|
| T |
4507391 |
gtgaagaagcttagctagtttgaacaatggattgatatggccttgagttggatatggaatcaacacagcatgtggttttctctttgcaaa |
4507480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 24 - 206
Target Start/End: Original strand, 4558501 - 4558683
Alignment:
| Q |
24 |
aagctaaaatcagtcaaaccatctaaggcatttggacctcttgatttgagcaagcgtttgtgattgtattcagtgttaacaaaggttatgtgaaagcctc |
123 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||||||||| |||||||| |||||||| |||||||||||||| ||| ||||||||||||| |||| |
|
|
| T |
4558501 |
aagctaaaatcagtgaaaccatcaaaggcatttggacctcttgacttgagcaaccgtttgtggttgtattcagtgtttacataggttatgtgaaatcctc |
4558600 |
T |
|
| Q |
124 |
taaggtgaagaagctttgctagtttgaacaatggattgatatggccttgaactggatatggaatcatcacaacatgtggtttt |
206 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| | |||| ||||||||||| |
|
|
| T |
4558601 |
taaggtgaagaagttttgctagtttcaacaatggattgatatggccttgaactggatatggaattaacacagcatgtggtttt |
4558683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 24 - 215
Target Start/End: Complemental strand, 4513731 - 4513540
Alignment:
| Q |
24 |
aagctaaaatcagtcaaaccatctaaggcatttggacctcttgatttgagcaagcgtttgtgattgtattcagtgttaacaaaggttatgtgaaagcctc |
123 |
Q |
| |
|
|||| |||||| || |||||||| || ||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
4513731 |
aagcgaaaatcggtgaaaccatcaaaagcattaggacctcttgatttgagcaaacgtttgtgattgtattcggtgttaacaaaggttatgtgaaagcctc |
4513632 |
T |
|
| Q |
124 |
taaggtgaagaagctttgctagtttgaacaatggattgatatggccttgaactggatatggaatcatcacaacatgtggttttctgtttgca |
215 |
Q |
| |
|
|||||||||| || ||||||| | |||||| |||||||||||||||||||| |||||||||||||| |||| |||||||||||||| ||||| |
|
|
| T |
4513631 |
taaggtgaagtagttttgctaatctgaacattggattgatatggccttgaagtggatatggaatcaacacagcatgtggttttctgcttgca |
4513540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 28 - 206
Target Start/End: Complemental strand, 4612466 - 4612288
Alignment:
| Q |
28 |
taaaatcagtcaaaccatctaaggcatttggacctcttgatttgagcaagcgtttgtgattgtattcagtgttaacaaaggttatgtgaaagcctctaag |
127 |
Q |
| |
|
|||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||| || || |||||||||||||||||||| |
|
|
| T |
4612466 |
taaaatcagtgaaaccaacaaaggcatttggacctcttgatttgagcaagcgtttgtgattgtattcggtgttgacgaatgttatgtgaaagcctctaag |
4612367 |
T |
|
| Q |
128 |
gtgaagaagctttgctagtttgaacaatggattgatatggccttgaactggatatggaatcatcacaacatgtggtttt |
206 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| | ||| ||||||||||| |
|
|
| T |
4612366 |
gtgaagaagttttgctagtttgattaatggattgatatggccttgaactggatatggaattaacactgcatgtggtttt |
4612288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 7 - 220
Target Start/End: Original strand, 3173362 - 3173575
Alignment:
| Q |
7 |
catctgggattgtttcgaagctaaaatcagtcaaaccatctaaggcatttggacctcttgatttgagcaagcgtttgtgattgtattcagtgttaacaaa |
106 |
Q |
| |
|
||||||| || || || ||| |||||||| | |||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
3173362 |
catctggtatagtctcaaagttaaaatcattgaaaccatcaaaggcatttggaccctttgatttgagcaaccgtttgtgattgtattcagtgtttacaaa |
3173461 |
T |
|
| Q |
107 |
ggttatgtgaaagcctctaaggtgaagaagctttgctagtttgaacaatggattgatatggccttgaactggatatggaatcatcacaacatgtggtttt |
206 |
Q |
| |
|
|||||||||||||||||||| |||||| || ||||||||||| ||||||| |||||||||||||||||||||||||||| | | ||| ||||||||||| |
|
|
| T |
3173462 |
ggttatgtgaaagcctctaaagtgaagtagttttgctagtttcaacaatgcattgatatggccttgaactggatatggagttaacactgcatgtggtttt |
3173561 |
T |
|
| Q |
207 |
ctgtttgcaaagtt |
220 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
3173562 |
ctctttgcaaagtt |
3173575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 7 - 184
Target Start/End: Complemental strand, 4488966 - 4488789
Alignment:
| Q |
7 |
catctgggattgtttcgaagctaaaatcagtcaaaccatctaaggcatttggacctcttgatttgagcaagcgtttgtgattgtattcagtgttaacaaa |
106 |
Q |
| |
|
||||||| || || || |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
4488966 |
catctggaatagtctcaaagctaaaatcagttaaaccatcaaaggcatttggacctcttgatttgagcaagcgtttgtgattgtattcagtgttgacaaa |
4488867 |
T |
|
| Q |
107 |
ggttatgtgaaagcctctaaggtgaagaagctttgctagtttgaacaatggattgatatggccttgaactggatatgg |
184 |
Q |
| |
|
|||||||||||| |||||||||||||| || ||| ||||||| ||||||| |||||||||||||||||||||| |||| |
|
|
| T |
4488866 |
ggttatgtgaaatcctctaaggtgaagtagttttcctagtttcaacaatgcattgatatggccttgaactggaaatgg |
4488789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 39 - 202
Target Start/End: Original strand, 4623698 - 4623861
Alignment:
| Q |
39 |
aaaccatctaaggcatttggacctcttgatttgagcaagcgtttgtgattgtattcagtgttaacaaaggttatgtgaaagcctctaaggtgaagaagct |
138 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||| |||||| |||||||| |
|
|
| T |
4623698 |
aaaccatcaaaggcctttggacctcttgatttgagcaagcgtttgtgattgtattcggtgtgaccaaaggttatgtgaaagcctttaaggtaaagaagct |
4623797 |
T |
|
| Q |
139 |
ttgctagtttgaacaatggattgatatggccttgaactggatatggaatcatcacaacatgtgg |
202 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||| ||||| |||| ||||||| |
|
|
| T |
4623798 |
ttgctagtttgaacaatggattgatatgaccttgaactggatatgcaatcaacacagcatgtgg |
4623861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 40 - 226
Target Start/End: Original strand, 4565421 - 4565607
Alignment:
| Q |
40 |
aaccatctaaggcatttggacctcttgatttgagcaagcgtttgtgattgtattcagtgttaacaaaggttatgtgaaagcctctaaggtgaagaagctt |
139 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||| ||||||||||| ||||| ||||||||||||||||| || |
|
|
| T |
4565421 |
aaccatctaaggcatttggacctcttgattttagcaatcgtttatgattgtattcagtgttgacaaaggttatatgaaatcctctaaggtgaagaagttt |
4565520 |
T |
|
| Q |
140 |
tgctagtttgaacaatggattgatatggccttgaactggatatggaatcatcacaacatgtggttttctgtttgcaaagtttcccat |
226 |
Q |
| |
|
||| ||||||||||||||||| ||||| ||||||| |||| |||||||| |||| |||||||||||||||||||||| ||||||| |
|
|
| T |
4565521 |
tgcaagtttgaacaatggatttatatgtccttgaaatggagctggaatcaacacagcatgtggttttctgtttgcaaaacttcccat |
4565607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 7 - 202
Target Start/End: Original strand, 4517699 - 4517894
Alignment:
| Q |
7 |
catctgggattgtttcgaagctaaaatcagtcaaaccatctaaggcatttggacctcttgatttgagcaagcgtttgtgattgtattcagtgttaacaaa |
106 |
Q |
| |
|
||||||| || || || ||| |||||||||| |||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||| ||||| ||||| |
|
|
| T |
4517699 |
catctggaatagtctcaaaggtaaaatcagtgaaaccatcaaaggcttttggacctcttgatttgagcaaacgtttgtgattgtattcggtgttgacaaa |
4517798 |
T |
|
| Q |
107 |
ggttatgtgaaagcctctaaggtgaagaagctttgctagtttgaacaatggattgatatggccttgaactggatatggaatcatcacaacatgtgg |
202 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||||||| ||||| ||||||||||||||||||| |||||||||| | ||||| ||||||| |
|
|
| T |
4517799 |
ggttatgtgaaagcctctaagatgaagaagttttgctagttttaacaacggattgatatggccttgaagtggatatggagttatcactgcatgtgg |
4517894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 53 - 202
Target Start/End: Complemental strand, 4265780 - 4265631
Alignment:
| Q |
53 |
atttggacctcttgatttgagcaagcgtttgtgattgtattcagtgttaacaaaggttatgtgaaagcctctaaggtgaagaagctttgctagtttgaac |
152 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
4265780 |
atttggacctcttgatttgagcaagcgtttgtgattgtattcagtgttgacaaaggttatgtgaaagcctctaaggtgaagaagctttcctagattgaac |
4265681 |
T |
|
| Q |
153 |
aatggattgatatggccttgaactggatatggaatcatcacaacatgtgg |
202 |
Q |
| |
|
|||| ||||||||||||||||| |||| |||||||| |||| ||||||| |
|
|
| T |
4265680 |
aatgcattgatatggccttgaaatggagctggaatcaacacagcatgtgg |
4265631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 28 - 202
Target Start/End: Complemental strand, 4258924 - 4258750
Alignment:
| Q |
28 |
taaaatcagtcaaaccatctaaggcatttggacctcttgatttgagcaagcgtttgtgattgtattcagtgttaacaaaggttatgtgaaagcctctaag |
127 |
Q |
| |
|
|||||||| | |||||||| | ||||||| |||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||| ||| ||| |
|
|
| T |
4258924 |
taaaatcaatgaaaccatcaacggcattttcacctcttgatttgagcaaacgtttgtgattatattcagtgttgacaaaggttatgtgaaaacctttaaa |
4258825 |
T |
|
| Q |
128 |
gtgaagaagctttgctagtttgaacaatggattgatatggccttgaactggatatggaatcatcacaacatgtgg |
202 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||| |
|
|
| T |
4258824 |
gtgaagaagcttagctagtttgaacaatggattgatatggccttgagctggatatggaatcaacacagcatgtgg |
4258750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 7 - 185
Target Start/End: Original strand, 4575814 - 4575992
Alignment:
| Q |
7 |
catctgggattgtttcgaagctaaaatcagtcaaaccatctaaggcatttggacctcttgatttgagcaagcgtttgtgattgtattcagtgttaacaaa |
106 |
Q |
| |
|
||||||| || || || ||| |||| ||||| |||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4575814 |
catctggtatagtctcaaagttaaagtcagtgaaaccatcaaaggcattttcacctcttgatttgagcaaacgtttgtgattgtattcagtgttaacaaa |
4575913 |
T |
|
| Q |
107 |
ggttatgtgaaagcctctaaggtgaagaagctttgctagtttgaacaatggattgatatggccttgaactggatatgga |
185 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||||| ||| ||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
4575914 |
ggttatgtgaaagcctctaaggtgaagcagttttgctattttcaacaatgcattgatatggccttgaactggaaatgga |
4575992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 39 - 206
Target Start/End: Original strand, 4572357 - 4572524
Alignment:
| Q |
39 |
aaaccatctaaggcatttggacctcttgatttgagcaagcgtttgtgattgtattcagtgttaacaaaggttatgtgaaagcctctaaggtgaagaagct |
138 |
Q |
| |
|
|||||||| ||||||||| |||||||||| |||||||| ||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||| | |
|
|
| T |
4572357 |
aaaccatcaaaggcattttgacctcttgacttgagcaaccgtttgtgattgtattcagtgtttacataggttatgtgaaaacctctaaggtgaagaaatt |
4572456 |
T |
|
| Q |
139 |
ttgctagtttgaacaatggattgatatggccttgaactggatatggaatcatcacaacatgtggtttt |
206 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||| || | |||| ||||||||||| |
|
|
| T |
4572457 |
ttgctagttgcaacaatggattgatatggccttgaactggatatgggattaacacagcatgtggtttt |
4572524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 7 - 202
Target Start/End: Original strand, 4581373 - 4581568
Alignment:
| Q |
7 |
catctgggattgtttcgaagctaaaatcagtcaaaccatctaaggcatttggacctcttgatttgagcaagcgtttgtgattgtattcagtgttaacaaa |
106 |
Q |
| |
|
||||||| || || || ||| ||||||| || |||||||| || || ||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
4581373 |
catctggaatagtctcaaaggtaaaatcggtgaaaccatcaaacgcttttggacctcttgatttgagcaagcgtttgtgattgtattcggtgttgacaaa |
4581472 |
T |
|
| Q |
107 |
ggttatgtgaaagcctctaaggtgaagaagctttgctagtttgaacaatggattgatatggccttgaactggatatggaatcatcacaacatgtgg |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| | | |||||| ||||||| ||||||| |||||||||||||| ||| ||||||| |
|
|
| T |
4581473 |
ggttatgtgaaagcctctaaggtgaagaagctttgctagtgttattaatggagtgatatgtccttgaagtggatatggaatcaacactgcatgtgg |
4581568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 7 - 206
Target Start/End: Original strand, 4586991 - 4587190
Alignment:
| Q |
7 |
catctgggattgtttcgaagctaaaatcagtcaaaccatctaaggcatttggacctcttgatttgagcaagcgtttgtgattgtattcagtgttaacaaa |
106 |
Q |
| |
|
||||||| || || || |||||||||||||| ||| |||| |||||||||||| ||||||| || ||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
4586991 |
catctggaatagtctcaaagctaaaatcagttaaatcatcaaaggcatttggagctcttgacttaagcaaccgtttgtgattgtattcagtgtttacaaa |
4587090 |
T |
|
| Q |
107 |
ggttatgtgaaagcctctaaggtgaagaagctttgctagtttgaacaatggattgatatggccttgaactggatatggaatcatcacaacatgtggtttt |
206 |
Q |
| |
|
|||||||||||| |||| |||||||||||| || |||||||| |||||||||||||||||||||||||||||| |||| || | |||| |||| |||||| |
|
|
| T |
4587091 |
ggttatgtgaaatcctcgaaggtgaagaagtttagctagtttcaacaatggattgatatggccttgaactggagatgggattaacacagcatgaggtttt |
4587190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 39 - 202
Target Start/End: Original strand, 4627541 - 4627704
Alignment:
| Q |
39 |
aaaccatctaaggcatttggacctcttgatttgagcaagcgtttgtgattgtattcagtgttaacaaaggttatgtgaaagcctctaaggtgaagaagct |
138 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | | |
|
|
| T |
4627541 |
aaaccatcaaaggcattttcacctcttgatttgagcaaacgtttgtgattgtattcagtgttgacaaaggttatgtgaaagcctctaaggtgaagtaatt |
4627640 |
T |
|
| Q |
139 |
ttgctagtttgaacaatggattgatatggccttgaactggatatggaatcatcacaacatgtgg |
202 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||||| |||| ||||||||| |||| ||||||| |
|
|
| T |
4627641 |
ttgctagtatcaacaatggattgatatggccttgaagtggaaatggaatcaacacagcatgtgg |
4627704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 7 - 220
Target Start/End: Original strand, 4482224 - 4482437
Alignment:
| Q |
7 |
catctgggattgtttcgaagctaaaatcagtcaaaccatctaaggcatttggacctcttgatttgagcaagcgtttgtgattgtattcagtgttaacaaa |
106 |
Q |
| |
|
||||||| || ||||| ||| |||||||||| |||||||| ||||| |||||||| |||||||| ||||| ||||||||||||||||| ||||| ||||| |
|
|
| T |
4482224 |
catctggtatcgtttcaaaggtaaaatcagtgaaaccatcaaaggcttttggaccccttgattttagcaaacgtttgtgattgtattcggtgttgacaaa |
4482323 |
T |
|
| Q |
107 |
ggttatgtgaaagcctctaaggtgaagaagctttgctagtttgaacaatggattgatatggccttgaactggatatggaatcatcacaacatgtggtttt |
206 |
Q |
| |
|
||||||||||||||||||||||||||| || ||| ||| ||| ||||||| |||||||||||||||| ||||| ||||| ||| ||| ||||||||||| |
|
|
| T |
4482324 |
ggttatgtgaaagcctctaaggtgaagtagttttcctattttcaacaatgcattgatatggccttgagctggaaatggagtcaacactgcatgtggtttt |
4482423 |
T |
|
| Q |
207 |
ctgtttgcaaagtt |
220 |
Q |
| |
|
| | ||||||||| |
|
|
| T |
4482424 |
ttttctgcaaagtt |
4482437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 57 - 217
Target Start/End: Original strand, 4471323 - 4471483
Alignment:
| Q |
57 |
ggacctcttgatttgagcaagcgtttgtgattgtattcagtgttaacaaaggttatgtgaaagcctctaaggtgaagaagctttgctagtttgaacaatg |
156 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
4471323 |
ggacctcttgaattgagcaaggctttgtgattgtattcagtgttgacaaacgttatgtgaaagcctctaaggtgaagaagctttgctagtttcaacaatg |
4471422 |
T |
|
| Q |
157 |
gattgatatggccttgaactggatatggaatcatcacaacatgtggttttctgtttgcaaa |
217 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||| ||| ||||||| ||| | |||||||| |
|
|
| T |
4471423 |
cattgatatggccttgagctggacatggaatcaatacagcatgtggctttgtctttgcaaa |
4471483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 7 - 185
Target Start/End: Original strand, 4569433 - 4569607
Alignment:
| Q |
7 |
catctgggattgtttcgaagctaaaatcagtcaaaccatctaaggcatttggacctcttgatttgagcaagcgtttgtgattgtattcagtgttaacaaa |
106 |
Q |
| |
|
||||||| || || || ||| |||||||||| |||||||| ||||| ||||||||||||||||||||||| |||||||||| || ||||| ||||| |
|
|
| T |
4569433 |
catctggaatagtctcaaaggtaaaatcagtgaaaccatcaaaggcttttggacctcttgatttgagcaaatgtttgtgatt----tcggtgttgacaaa |
4569528 |
T |
|
| Q |
107 |
ggttatgtgaaagcctctaaggtgaagaagctttgctagtttgaacaatggattgatatggccttgaactggatatgga |
185 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||| |||||||||| |
|
|
| T |
4569529 |
ggttatgtgaaagcctctaaggtgaagaagttttgctagtttcaataatggattgatatggccttgaagtggatatgga |
4569607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 28 - 217
Target Start/End: Original strand, 4462587 - 4462776
Alignment:
| Q |
28 |
taaaatcagtcaaaccatctaaggcatttggacctcttgatttgagcaagcgtttgtgattgtattcagtgttaacaaaggttatgtgaaagcctctaag |
127 |
Q |
| |
|
|||| ||||| |||||||||| | ||| ||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
4462587 |
taaagtcagtgaaaccatctagagaattaggacctcttgaattgagcaagcaattgtgattgtattcagtgttgacaaaggttatgtgaaaacctctaag |
4462686 |
T |
|
| Q |
128 |
gtgaagaagctttgctagtttgaacaatggattgatatggccttgaactggatatggaatcatcacaacatgtggttttctgtttgcaaa |
217 |
Q |
| |
|
|||||| || ||| ||||||| ||||||| ||||||||||||||| |||| ||||||||| |||| ||||||| ||| | |||||||| |
|
|
| T |
4462687 |
gtgaagtagttttcctagtttcaacaatgcattgatatggccttgggatggacatggaatcaacacagcatgtggctttgtctttgcaaa |
4462776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 7 - 185
Target Start/End: Original strand, 4562021 - 4562199
Alignment:
| Q |
7 |
catctgggattgtttcgaagctaaaatcagtcaaaccatctaaggcatttggacctcttgatttgagcaagcgtttgtgattgtattcagtgttaacaaa |
106 |
Q |
| |
|
||||||| || || || ||| |||| ||||| |||||||| ||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4562021 |
catctggtatagtctcaaagttaaagtcagtgaaaccatcaaaggcattttcacctcttgattt-agcaaacgtttgtgattgtattcagtgttaacaaa |
4562119 |
T |
|
| Q |
107 |
ggtt-atgtgaaagcctctaaggtgaagaagctttgctagtttgaacaatggattgatatggccttgaactggatatgga |
185 |
Q |
| |
|
|||| |||||||||||||| |||||||| || ||||||| ||| ||||||| ||||||||| |||||||||||| ||||| |
|
|
| T |
4562120 |
ggtttatgtgaaagcctcttaggtgaagcagttttgctattttcaacaatgcattgatatgaccttgaactggaaatgga |
4562199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 7 - 126
Target Start/End: Complemental strand, 4503062 - 4502943
Alignment:
| Q |
7 |
catctgggattgtttcgaagctaaaatcagtcaaaccatctaaggcatttggacctcttgatttgagcaagcgtttgtgattgtattcagtgttaacaaa |
106 |
Q |
| |
|
||||||| || || || ||| |||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
4503062 |
catctggtatggtctcaaaggtaaaatcattgaaaccatcaaaggcatttggacctcttgatttgagcaagcgtttgtgattgtattcggtgttgacaaa |
4502963 |
T |
|
| Q |
107 |
ggttatgtgaaagcctctaa |
126 |
Q |
| |
|
|||||||||||| ||||||| |
|
|
| T |
4502962 |
ggttatgtgaaatcctctaa |
4502943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 57 - 189
Target Start/End: Original strand, 4599572 - 4599704
Alignment:
| Q |
57 |
ggacctcttgatttgagcaagcgtttgtgattgtattcagtgttaacaaaggttatgtgaaagcctctaaggtgaagaagctttgctagtttgaacaatg |
156 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || ||||| || |||||||||| ||| |||||||||||||||| |||||||||||||| ||| |
|
|
| T |
4599572 |
ggacctcttgatttgagcaagcgtttgtgattgtactcggtgttcacgaaggttatgtaaaatcctctaaggtgaagaatctttgctagtttgattaata |
4599671 |
T |
|
| Q |
157 |
gattgatatggccttgaactggatatggaatca |
189 |
Q |
| |
|
||||||||| ||||||| ||| ||||||||| |
|
|
| T |
4599672 |
gattgatatttccttgaattggtaatggaatca |
4599704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 40 - 202
Target Start/End: Complemental strand, 4255545 - 4255395
Alignment:
| Q |
40 |
aaccatctaaggcatttggacctcttgatttgagcaagcgtttgtgattgtattcagtgttaacaaaggttatgtgaaagcctctaaggtgaagaagctt |
139 |
Q |
| |
|
||||||| ||||| |||||||||||||||| |||||||||||||||||||||||| ||||| |||||| ||| |||| ||||| | || |
|
|
| T |
4255545 |
aaccatcaaaggcttttggacctcttgattcgagcaagcgtttgtgattgtattcggtgttgacaaag------------cctttaagatgaagtaattt |
4255458 |
T |
|
| Q |
140 |
tgctagtttgaacaatggattgatatggccttgaactggatatggaatcatcacaacatgtgg |
202 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
4255457 |
tgctagtttgaataatagattgatatggccttgaactggatatggaatcaacacagcatgtgg |
4255395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 93
Target Start/End: Complemental strand, 4483569 - 4483534
Alignment:
| Q |
58 |
gacctcttgatttgagcaagcgtttgtgattgtatt |
93 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |
|
|
| T |
4483569 |
gacctcttgatttgagcaaacgtttgtgattgtatt |
4483534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 185
Target Start/End: Complemental strand, 4497899 - 4497836
Alignment:
| Q |
122 |
tctaaggtgaagaagctttgctagtttgaacaatggattgatatggccttgaactggatatgga |
185 |
Q |
| |
|
|||||||||||| | ||| ||||||| |||||||||||||||||||||| || |||| ||||| |
|
|
| T |
4497899 |
tctaaggtgaagtaattttcctagtttcaacaatggattgatatggccttaaattggaaatgga |
4497836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 100
Target Start/End: Complemental strand, 4298235 - 4298174
Alignment:
| Q |
39 |
aaaccatctaaggcatttggacctcttgatttgagcaagcgtttgtgattgtattcagtgtt |
100 |
Q |
| |
|
|||||||| || || |||||||| ||||||| ||||| | |||||||||||||||| ||||| |
|
|
| T |
4298235 |
aaaccatcaaaagcttttggaccccttgattcgagcaggtgtttgtgattgtattcggtgtt |
4298174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 21 - 227
Target Start/End: Complemental strand, 2206 - 2000
Alignment:
| Q |
21 |
tcgaagctaaaatcagtcaaaccatctaaggcatttggacctcttgatttgagcaagcgtttgtgattgtattcagtgttaacaaaggttatgtgaaagc |
120 |
Q |
| |
|
||||||| |||||||| |||||||| | ||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
2206 |
tcgaagcaaaaatcagcgaaaccatcaagagcattaggacctcttgatttgagcaagcgtttatgattgtattcagtgttgacaaaggttatgtgaaagc |
2107 |
T |
|
| Q |
121 |
ctctaaggtgaagaagctttgctagtttgaacaatggattgatatggccttgaactggatatggaatcatcacaacatgtggttttctgtttgcaaagtt |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2106 |
ctctaaggtgaagaagctttgctagtttgaacaatggattgatatggccttgaactggatatggaatcatcacaacatgtggttttctgtttgcaaagtt |
2007 |
T |
|
| Q |
221 |
tcccatt |
227 |
Q |
| |
|
||||||| |
|
|
| T |
2006 |
tcccatt |
2000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 166; Significance: 5e-89; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 7 - 220
Target Start/End: Original strand, 1282792 - 1283005
Alignment:
| Q |
7 |
catctgggattgtttcgaagctaaaatcagtcaaaccatctaaggcatttggacctcttgatttgagcaagcgtttgtgattgtattcagtgttaacaaa |
106 |
Q |
| |
|
|||||||||| ||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
1282792 |
catctgggatggtttcaaagctaaaatcagtgaaaccatctagggcatttggacctcttgatttgagcaagcgtttgtgattgtattcagtattaacaaa |
1282891 |
T |
|
| Q |
107 |
ggttatgtgaaagcctctaaggtgaagaagctttgctagtttgaacaatggattgatatggccttgaactggatatggaatcatcacaacatgtggtttt |
206 |
Q |
| |
|
|||||||| |||||||||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||| |
|
|
| T |
1282892 |
ggttatgtaaaagcctctaaggtgaagtagttttgctagtttgaacaatggattgatatggccttgagctggatatggaatcaacacagcatgtggtttt |
1282991 |
T |
|
| Q |
207 |
ctgtttgcaaagtt |
220 |
Q |
| |
|
||||||||||||| |
|
|
| T |
1282992 |
gtgtttgcaaagtt |
1283005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 118
Target Start/End: Original strand, 35776276 - 35776316
Alignment:
| Q |
78 |
cgtttgtgattgtattcagtgttaacaaaggttatgtgaaa |
118 |
Q |
| |
|
|||||||| ||| |||||||||| ||||||||||||||||| |
|
|
| T |
35776276 |
cgtttgtggttgaattcagtgttcacaaaggttatgtgaaa |
35776316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 118
Target Start/End: Original strand, 35842083 - 35842123
Alignment:
| Q |
78 |
cgtttgtgattgtattcagtgttaacaaaggttatgtgaaa |
118 |
Q |
| |
|
|||||||| ||| |||||||||| ||||||||||||||||| |
|
|
| T |
35842083 |
cgtttgtggttgaattcagtgttcacaaaggttatgtgaaa |
35842123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 118
Target Start/End: Original strand, 35854591 - 35854631
Alignment:
| Q |
78 |
cgtttgtgattgtattcagtgttaacaaaggttatgtgaaa |
118 |
Q |
| |
|
|||||||| ||| |||||||||| ||||||||||||||||| |
|
|
| T |
35854591 |
cgtttgtggttgaattcagtgttcacaaaggttatgtgaaa |
35854631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 118
Target Start/End: Original strand, 35869200 - 35869240
Alignment:
| Q |
78 |
cgtttgtgattgtattcagtgttaacaaaggttatgtgaaa |
118 |
Q |
| |
|
|||||||| ||| |||||||||| ||||||||||||||||| |
|
|
| T |
35869200 |
cgtttgtggttgaattcagtgttcacaaaggttatgtgaaa |
35869240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0199 (Bit Score: 149; Significance: 7e-79; HSPs: 1)
Name: scaffold0199
Description:
Target: scaffold0199; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 1117 - 1337
Alignment:
| Q |
7 |
catctgggattgtttcgaagctaaaatcagtcaaaccatctaaggcatttggacctcttgatttgagcaagcgtttgtgattgtattcagtgttaacaaa |
106 |
Q |
| |
|
|||||||||| ||||| |||||||||||||| |||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||| | |
|
|
| T |
1117 |
catctgggatggtttcaaagctaaaatcagtgaaaccatccaaggcagttggacctcttgatttgagcaaacgtttgtgattgtattcagtgttgacata |
1216 |
T |
|
| Q |
107 |
ggttatgtgaaagcctctaaggtgaagaagctttgctagtttgaacaatggattgatatggccttgaactggatatggaatcatcacaacatgtggtttt |
206 |
Q |
| |
|
||||| ||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||| | |||| |||||| |||| |
|
|
| T |
1217 |
ggttacatgagagcctctaaggtgaataagttttgctagtttgaacaatggattgatatggccttgagctggatatggaatgaacacagcatgtgatttt |
1316 |
T |
|
| Q |
207 |
ctgtttgcaaagtttcccatt |
227 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
1317 |
ctgtttgcaaagtttcccatt |
1337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 149; Significance: 7e-79; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 1675880 - 1676100
Alignment:
| Q |
7 |
catctgggattgtttcgaagctaaaatcagtcaaaccatctaaggcatttggacctcttgatttgagcaagcgtttgtgattgtattcagtgttaacaaa |
106 |
Q |
| |
|
|||||||||| ||||| |||||||||||||| |||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||| | |
|
|
| T |
1675880 |
catctgggatggtttcaaagctaaaatcagtgaaaccatccaaggcagttggacctcttgatttgagcaaacgtttgtgattgtattcagtgttgacata |
1675979 |
T |
|
| Q |
107 |
ggttatgtgaaagcctctaaggtgaagaagctttgctagtttgaacaatggattgatatggccttgaactggatatggaatcatcacaacatgtggtttt |
206 |
Q |
| |
|
||||| ||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||| | |||| |||||| |||| |
|
|
| T |
1675980 |
ggttacatgagagcctctaaggtgaataagttttgctagtttgaacaatggattgatatggccttgagctggatatggaatgaacacagcatgtgatttt |
1676079 |
T |
|
| Q |
207 |
ctgtttgcaaagtttcccatt |
227 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
1676080 |
ctgtttgcaaagtttcccatt |
1676100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 24 - 206
Target Start/End: Complemental strand, 20862562 - 20862380
Alignment:
| Q |
24 |
aagctaaaatcagtcaaaccatctaaggcatttggacctcttgatttgagcaagcgtttgtgattgtattcagtgttaacaaaggttatgtgaaagcctc |
123 |
Q |
| |
|
|||| ||| ||||| |||||||| |||| ||||||| |||| || |||||||||||||||||||||||||| || ||||| ||||||| |||||||| |
|
|
| T |
20862562 |
aagcgaaagtcagtgaaaccatcaaagggtattggacccattgacttaagcaagcgtttgtgattgtattcagtattgacaaatgttatgtaaaagcctc |
20862463 |
T |
|
| Q |
124 |
taaggtgaagaagctttgctagtttgaacaatggattgatatggccttgaactggatatggaatcatcacaacatgtggtttt |
206 |
Q |
| |
|
|||||||||| || ||||||||||| |||| |||||||||||| ||||||| |||||||||| | | ||| ||||||||||| |
|
|
| T |
20862462 |
taaggtgaagtagttttgctagttttaacattggattgatatgaccttgaagtggatatggagttaacactgcatgtggtttt |
20862380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0475 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: scaffold0475
Description:
Target: scaffold0475; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 21 - 217
Target Start/End: Original strand, 2197 - 2393
Alignment:
| Q |
21 |
tcgaagctaaaatcagtcaaaccatctaaggcatttggacctcttgatttgagcaagcgtttgtgattgtattcagtgttaacaaaggttatgtgaaagc |
120 |
Q |
| |
|
||||||| |||||||| |||||||| | ||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
2197 |
tcgaagcaaaaatcagcgaaaccatcaagagcattaggacctcttgatttgagcaagcgtttatgattgtattcagtgttgacaaaggttatgtgaaagc |
2296 |
T |
|
| Q |
121 |
ctctaaggtgaagaagctttgctagtttgaacaatggattgatatggccttgaactggatatggaatcatcacaacatgtggttttctgtttgcaaa |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||| |
|
|
| T |
2297 |
ctctaaggtgaagaagctttgctagtttgaataatggattgatatggccttgaactggatatggaatcaacacagcatgtggttttttgtttgcaaa |
2393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 61 - 199
Target Start/End: Original strand, 24104508 - 24104646
Alignment:
| Q |
61 |
ctcttgatttgagcaagcgtttgtgattgtattcagtgttaacaaaggttatgtgaaagcctctaaggtgaagaagctttgctagtttgaacaatggatt |
160 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |
|
|
| T |
24104508 |
ctcttgattcgagcaagcgtttgtgattgtattcggtgttcacgaaggttatgtgaaagcctctaaggtgaagaagctttcctagtttgaacaatgcatt |
24104607 |
T |
|
| Q |
161 |
gatatggccttgaactggatatggaatcatcacaacatg |
199 |
Q |
| |
|
|||||| ||||||| |||| |||||||| |||| |||| |
|
|
| T |
24104608 |
gatatgaccttgaaatggagctggaatcaacacagcatg |
24104646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 109
Target Start/End: Original strand, 26903639 - 26903670
Alignment:
| Q |
78 |
cgtttgtgattgtattcagtgttaacaaaggt |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
26903639 |
cgtttgtgattgtattcagtgttaacaaaggt |
26903670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 29 - 202
Target Start/End: Original strand, 3088126 - 3088299
Alignment:
| Q |
29 |
aaaatcagtcaaaccatctaaggcatttggacctcttgatttgagcaagcgtttgtgattgtattcagtgttaacaaaggttatgtgaaagcctctaagg |
128 |
Q |
| |
|
||||||||| |||||||| | | ||| | |||||||||||| ||||| || |||||||||||||| || || ||||||||||||||||||||| ||||| |
|
|
| T |
3088126 |
aaaatcagtgaaaccatcaagagaattagaacctcttgatttaagcaaacggttgtgattgtattcggtattgacaaaggttatgtgaaagcctttaagg |
3088225 |
T |
|
| Q |
129 |
tgaagaagctttgctagtttgaacaatggattgatatggccttgaactggatatggaatcatcacaacatgtgg |
202 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||| ||||| ||||||| |||||||||||||| |||| ||||||| |
|
|
| T |
3088226 |
tgaagaagttttgctagttttaacaatggatttatatgaccttgaagtggatatggaatcaacacagcatgtgg |
3088299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 114
Target Start/End: Complemental strand, 1349641 - 1349579
Alignment:
| Q |
52 |
catttggacctcttgatttgagcaagcgtttgtgattgtattcagtgttaacaaaggttatgt |
114 |
Q |
| |
|
|||| |||||| | |||||||| ||||||||||| ||| |||||||||| ||||| ||||||| |
|
|
| T |
1349641 |
cattaggacctatggatttgagtaagcgtttgtggttgaattcagtgttgacaaatgttatgt |
1349579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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