View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21163_low_93 (Length: 209)
Name: NF21163_low_93
Description: NF21163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21163_low_93 |
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Alignment Details
Target: chr4 (Bit Score: 149; Significance: 7e-79; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 13 - 192
Target Start/End: Complemental strand, 40888629 - 40888450
Alignment:
| Q |
13 |
cacagatacaaattacccacaattcttgtggttnnnnnnnnngttctcagacatttcttgtaggaaagcagccactgaagcatcactaaatagtaaatac |
112 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
40888629 |
cacagatacaaattacccacaattcttgtggttaaaaaaaaagttctcagacatttcttgtaggaaagcagccactgaagcatcattaaatagtaaatac |
40888530 |
T |
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| Q |
113 |
cagcataagataagaatcaacacttgaaaatatatctagcatctgttacatacctcaggatcatgacccttggcagcaat |
192 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40888529 |
cagcataagataagaatcaacacttgaaaatatatctagcatctgttacatacctcaggatcatgacccttggcagcaat |
40888450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 13 - 192
Target Start/End: Complemental strand, 44139859 - 44139680
Alignment:
| Q |
13 |
cacagatacaaattacccacaattcttgtggttnnnnnnnnngttctcagacatttcttgtaggaaagcagccactgaagcatcactaaatagtaaatac |
112 |
Q |
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|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
44139859 |
cacagatacaaattacccacaattcttgtggttaaaaaaaaagttctcagacatttcttgtaggaaagcagccactgaagcatcaataaatagtaaatac |
44139760 |
T |
|
| Q |
113 |
cagcataagataagaatcaacacttgaaaatatatctagcatctgttacatacctcaggatcatgacccttggcagcaat |
192 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44139759 |
cagcataagataagaatcaacacttgaaaatatatctagcatctgttacatacctcaggatcatgacccttggcagcaat |
44139680 |
T |
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