View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21164_high_15 (Length: 249)
Name: NF21164_high_15
Description: NF21164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21164_high_15 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 249
Target Start/End: Complemental strand, 3531829 - 3531598
Alignment:
| Q |
18 |
attcgatacaagacatttatccaccagacatatgctgcactgccattaaagatgtttttgatgcaacccaagaaacatgtttctgtcaacttgtctacac |
117 |
Q |
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| T |
3531829 |
attcgatacaagacatttatccaccagacatatgctgcactgccattaaagatgtttttgatgcaacccaagaaacatgtttctgtcaacttgtctacac |
3531730 |
T |
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| Q |
118 |
tcctggtttatttgaagcttttggtgttaaattcactgtagggtaccgaattctccgcacctgtggcgtcaaatttgataccagcttctgcaatggtact |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |
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| T |
3531729 |
tcctggtttatttgaagcttttggtgttaaattcactgtagggtaccgaattctccgcacatgtggcgtcaaatttgataccagcttctgcaatggtaat |
3531630 |
T |
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| Q |
218 |
tgaaattaaaatgtagacaaaattaaatgcat |
249 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
3531629 |
tgaaattaaaatgtagacaaaattaaatgcat |
3531598 |
T |
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