View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21164_high_2 (Length: 417)
Name: NF21164_high_2
Description: NF21164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21164_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 16 - 407
Target Start/End: Complemental strand, 50508943 - 50508563
Alignment:
| Q |
16 |
aacaatattggacatatacaaaccaactcattgcatttgcatcccataacacaaactaaatattgattttgtgacacaagattcataactatagctgagt |
115 |
Q |
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| T |
50508943 |
aacaatattggacatatacaaaccaactcattgcatttgcatcccataacacaaactaaatattgattttgtga-----------taactatagctgtgt |
50508855 |
T |
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| Q |
116 |
aaattcaggaacttaaaccggaagatacaattcaaagtgtcacatcagacaaaagagaatttcaaattagtaaattgtgattattgtcgtaactactata |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50508854 |
aaattcaggaacttaaaccggaagatacaattcaaagtgtcacatcagacaaaagagaatttcaaattagtaaattgtgattattgtcgtaactactata |
50508755 |
T |
|
| Q |
216 |
ccactaagcggagtcggctacatgattaaacaccgtcataatgttaaaacatattaaaatgtttttaattcaatgtagagaatttgcttacggaagttat |
315 |
Q |
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| T |
50508754 |
ccactaagcggagtcggctacataattaaacaccatcataatgttaaaacatattaaaatgtttttaattcaatgtagagaatttgcttacggaagttat |
50508655 |
T |
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| Q |
316 |
tgagaaacaacatctaaaaatgctgtttcccccaagatgtttactagagttattatttatggttttgttggcttttaggatttattcttcat |
407 |
Q |
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| T |
50508654 |
tgagaaacaacatctaaaaatgctgtttcccccaagatgtttactagagttattatttagggttttgttggcttttaggatttattcttcat |
50508563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 138 - 202
Target Start/End: Complemental strand, 36395424 - 36395360
Alignment:
| Q |
138 |
agatacaattcaaagtgtcacatcagacaaaagagaatttcaaattagtaaattgtgattattgt |
202 |
Q |
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| T |
36395424 |
agatacaattcaaagtgtaacagcagacaaaagaggattgcaaattagcaaattgggatcattgt |
36395360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 10782891 - 10782969
Alignment:
| Q |
16 |
aacaatattggacatatacaaaccaactcattgcatttgcatcccataacacaaactaaatattgattttgtgacacaa |
94 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10782891 |
aacaatattggacatatagaaaccaactcattgcatttgcatcccataacacaaactaaatattgattttgtgacacaa |
10782969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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