View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21164_high_3 (Length: 394)
Name: NF21164_high_3
Description: NF21164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21164_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 168; Significance: 6e-90; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 8 - 285
Target Start/End: Original strand, 37023768 - 37024022
Alignment:
| Q |
8 |
agagaagaattgatcaagtaaatattatgttgctaaatcttgttccatacaagcacattttggttcaactttgtattatacaagcacttcttgtattcgn |
107 |
Q |
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| T |
37023768 |
agagaagaattgatcaagtaaatattatgttgctaaatcttgttccatacaagcacattttggttcaac-----attatacaagcacttcttgtattcgt |
37023862 |
T |
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| Q |
108 |
nnnnnn-cattactttcttcttgatattttagttagcaaactagaatagtgtagacaatagtaaaatatgtagtatgtaattataatcttgggttcaaat |
206 |
Q |
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| T |
37023863 |
tttttttcattactttcttcttgatattttagttagcaaactagaatagtgta-------------------gtatgtaattataatcttgggttcaaat |
37023943 |
T |
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| Q |
207 |
gcatgtaatatcttaatgataaatagttatgttcagtttgaatttgttatgagttcaaaatagagttggtaacatgtat |
285 |
Q |
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| T |
37023944 |
gcatgtaatatcttaatgataaatagttatgttcagtttgaatttgttatgagttcaaaatagagttggtaacatgtat |
37024022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 319 - 376
Target Start/End: Original strand, 37024020 - 37024077
Alignment:
| Q |
319 |
tatttatgttttgtactcacctcaggcaaaaagttggagttagtgagaatgcaatagg |
376 |
Q |
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| T |
37024020 |
tatttatgttttgtactcacctcaggcaaaaagttggagttagtgagaatgcaatagg |
37024077 |
T |
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