View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21164_low_1 (Length: 677)
Name: NF21164_low_1
Description: NF21164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21164_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 359; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 17 - 434
Target Start/End: Original strand, 2630884 - 2631301
Alignment:
| Q |
17 |
aacaagaattaacaaagacactcaaaagcatcgaaggcaaagacaccaaaatgctaaccacgattttggcagcacttcgcccatcaaatttgagtcaata |
116 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2630884 |
aacaagaattaacaaagacactcaaaagcatcgaagacaaagacaccgaagtgctaaccacgattttggcagcacttcgcccatcaaatttgagtcaata |
2630983 |
T |
|
| Q |
117 |
ttcaaccattcgtttcttaaagatcctttcagagccaaatggataaagctaacattataaatataatgctgaattcgatttgttgattgcatatgacatg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2630984 |
ttcaaccattcgtttcttaaagatcctttcagagccaaatggataaagctaacattataaatataatgctgaattcgatttgttgattgcatatgacatg |
2631083 |
T |
|
| Q |
217 |
cacctaatcgatctactccaaactcccgcgaagttgttatcatgaaactgtttaaatcaaattaacttccatgggcccgtcgacattaatttgcctccag |
316 |
Q |
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|| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2631084 |
catctaatcgatcaactccaaactcccgcgaagttgttatcatgaaactgtttaaatcaaattaacttccatgggcccgtcgacattaatttgcctccag |
2631183 |
T |
|
| Q |
317 |
attgtcaaaacgtacttaatggcattggcattcaaaatagagtttcatatcttctttnnnnnnnnntagagctgatatcactcattttataatgctgata |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
2631184 |
attgtcaaaacgtacttaatggcattggcattcaaaatagagcttcatatcttcttaaaaaaaaaatagagctgatatcactcattttataatgttgata |
2631283 |
T |
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| Q |
417 |
cactcacctctcgagctt |
434 |
Q |
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| T |
2631284 |
cactcacctctcgagctt |
2631301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 515 - 677
Target Start/End: Original strand, 2631402 - 2631572
Alignment:
| Q |
515 |
gatcgattatgtgaattgattaaatatgcatta--------ataaatttaataattcacacaaccacttaatcgactaatctatcattgtaattgaaaat |
606 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
2631402 |
gatcgattatgtgaattgattaaatatgcattaatcaattaataaatttaataattcacacaaccacttaatcgactaatctatcattgtaattcaaaat |
2631501 |
T |
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| Q |
607 |
cattaacttattctgatacaactaattaagtgtgatatatcttgaacaaaatcgtgaagtcctactctaca |
677 |
Q |
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| T |
2631502 |
cattaacttattctgatacaactaattaagtgtgatatatcttgaacaaaatcgtgaagtccaactctaca |
2631572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 457 - 493
Target Start/End: Original strand, 2631324 - 2631360
Alignment:
| Q |
457 |
tcttacttaaattttactaataaatctatcattgtag |
493 |
Q |
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| T |
2631324 |
tcttacttaaattttactaataaatctatcattgtag |
2631360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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