View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21164_low_10 (Length: 304)
Name: NF21164_low_10
Description: NF21164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21164_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 12 - 279
Target Start/End: Complemental strand, 56278104 - 56277837
Alignment:
| Q |
12 |
atgaagaccttgttctgatacctgaacataatgaagccttccttcatattctccaatgcaagcttgagggacggtcctaaactcacatgcaggaacaggt |
111 |
Q |
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| T |
56278104 |
atgaagaccttgttctgatacctgaacataatgaagccttccttcatattctccaatgcaagcttgagggacggtcctaaactcacatgccggaacaggt |
56278005 |
T |
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| Q |
112 |
actgaaatcatcaaagacagttccttttcaagattaaaggtgatgatttgatcaccttctgtaagccaatgcaagacacctcctatgtataaccctttgt |
211 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56278004 |
actgaaatcatcaaagacagttccttttcaacattaaaggtgatgatttgatcaccttctgtaagccaatgcaagacacctcctatgtataaccctttgt |
56277905 |
T |
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| Q |
212 |
ttttaatcaaaacataattacagtcgcatatctcattggatttcttccaagctttggtttctgaggag |
279 |
Q |
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||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
56277904 |
ttttaatcaaaccataattacagtcgcatgtctcattggatttcttccaagctttggtttctgaggag |
56277837 |
T |
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