View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21164_low_11 (Length: 286)

Name: NF21164_low_11
Description: NF21164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21164_low_11
NF21164_low_11
[»] chr5 (2 HSPs)
chr5 (187-279)||(32466706-32466798)
chr5 (151-203)||(32466516-32466568)
[»] chr1 (2 HSPs)
chr1 (70-149)||(46832146-46832225)
chr1 (70-149)||(46831956-46832035)
[»] chr8 (1 HSPs)
chr8 (70-149)||(8672504-8672583)


Alignment Details
Target: chr5 (Bit Score: 77; Significance: 9e-36; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 187 - 279
Target Start/End: Original strand, 32466706 - 32466798
Alignment:
Q  187 aacactattgttttataaatactctggcagcactgcctaagtataaaataagcgataaagttggtttgagagtgttcctcgatagtattatct 279  Q
    |||||||||||||||||||||||  |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  32466706 aacactattgttttataaatacttaggcagcactgtctaagtataaaataagcgataaagttggtttgagagtgttcctccatagtattatct 32466798  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 151 - 203
Target Start/End: Original strand, 32466516 - 32466568
Alignment:
Q  151 ttcgagaaaatctacaacaaataattcgctagaaataacactattgttttata 203  Q
    |||| ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  32466516 ttcgggaaaatccacaacaaataattcgctagaaataacactattgttttata 32466568  T

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Target: chr1 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 70 - 149
Target Start/End: Original strand, 46832146 - 46832225
Alignment:
Q  70 ccacatttatcttgccatcgatctgattgctgtgttgttgaaattcgtgagcttttagagtcgtgctacatagcactact 149  Q
    ||||||||||||||||||||| |||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  46832146 ccacatttatcttgccatcgacctgattgccgtgtcgttgaaattcgtgggcttttagagtcgtgctacatagcactact 46832225  T

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Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 70 - 149
Target Start/End: Original strand, 46831956 - 46832035
Alignment:
Q  70 ccacatttatcttgccatcgatctgattgctgtgttgttgaaattcgtgagcttttagagtcgtgctacatagcactact 149  Q
    ||||||||||||||||||| | |||||||| |||| || |||||||||| ||||||||||||||||||||||||||||||    
T  46831956 ccacatttatcttgccatcaacctgattgccgtgtcgtcgaaattcgtgggcttttagagtcgtgctacatagcactact 46832035  T

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Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 70 - 149
Target Start/End: Original strand, 8672504 - 8672583
Alignment:
Q  70 ccacatttatcttgccatcgatctgattgctgtgttgttgaaattcgtgagcttttagagtcgtgctacatagcactact 149  Q
    ||||||||||||||||| ||| |||||||  |||| || |||||||||| ||||||||||  ||||||||||||||||||    
T  8672504 ccacatttatcttgccaacgacctgattgtcgtgtcgtcgaaattcgtgggcttttagaggtgtgctacatagcactact 8672583  T

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