View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21164_low_12 (Length: 280)

Name: NF21164_low_12
Description: NF21164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21164_low_12
NF21164_low_12
[»] chr5 (3 HSPs)
chr5 (19-264)||(6159787-6160032)
chr5 (117-224)||(8987542-8987649)
chr5 (185-224)||(26045664-26045704)
[»] chr7 (6 HSPs)
chr7 (127-224)||(43344485-43344582)
chr7 (185-224)||(26385858-26385897)
chr7 (190-224)||(2339322-2339356)
chr7 (176-220)||(1819670-1819714)
chr7 (192-224)||(2331791-2331823)
chr7 (185-224)||(3478689-3478729)
[»] chr4 (2 HSPs)
chr4 (117-224)||(33283578-33283683)
chr4 (187-224)||(41231445-41231482)
[»] chr3 (3 HSPs)
chr3 (187-223)||(21152700-21152736)
chr3 (185-229)||(1652577-1652621)
chr3 (192-224)||(17572329-17572361)
[»] scaffold0127 (1 HSPs)
scaffold0127 (119-222)||(21181-21284)
[»] chr6 (5 HSPs)
chr6 (189-224)||(31611656-31611691)
chr6 (178-224)||(21029985-21030031)
chr6 (119-222)||(5746978-5747080)
chr6 (22-63)||(6764913-6764954)
chr6 (120-224)||(34093170-34093274)
[»] chr8 (2 HSPs)
chr8 (123-224)||(5221438-5221543)
chr8 (185-221)||(17720408-17720444)
[»] chr2 (1 HSPs)
chr2 (126-187)||(15817011-15817072)
[»] chr1 (3 HSPs)
chr1 (185-225)||(34775211-34775252)
chr1 (185-225)||(2878021-2878061)
chr1 (186-229)||(2987824-2987868)
[»] scaffold0620 (1 HSPs)
scaffold0620 (120-224)||(8504-8608)


Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 19 - 264
Target Start/End: Complemental strand, 6160032 - 6159787
Alignment:
Q  19 aggagctcaatgataaaaattatatttgttgccatagtttcactacaaaaagtgacactatttgatgggcgcatttgaccaacaatgatcannnnnnnaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||       ||    
T  6160032 aggagctcaatgataaaaattatatttgttgccatagtttcactacaaaaagtgacactatttgatgggtgcatttgaccaacaatgatcatttttttaa 6159933  T
Q  119 cggcaaattttattaaaaactcgatccctactcaagacgagcagagattagtgaattagagactacaaaggcgccgtatataggcggaacatccaaaata 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||    
T  6159932 cggcaaattttattaaaaactcgatccctactcaagacgagcagagattagtgaatcagagactacaaaggcgctgtatataggcggaacacccaaaata 6159833  T
Q  219 aacacctacaatgatcattcttcttgatttttcttctgttcttcat 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  6159832 aacacctacaatgatcattcttcttgatttttcttctgttcttcat 6159787  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 117 - 224
Target Start/End: Original strand, 8987542 - 8987649
Alignment:
Q  117 aacggcaaattttattaaaaactcgatccctactcaagacgagcagagattagtgaattagagactacaaaggcgccgtatataggcggaacatccaaaa 216  Q
    ||||||||| |||||| ||||||||| |||||||||  |||| |||||||| || ||| ||||||||| ||||| || |||||| |||||||| ||||||    
T  8987542 aacggcaaaatttatttaaaactcgacccctactcagaacgaacagagattggtaaatcagagactacgaaggcaccatatatatgcggaacacccaaaa 8987641  T
Q  217 taaacacc 224  Q
    ||||||||    
T  8987642 taaacacc 8987649  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 224
Target Start/End: Original strand, 26045664 - 26045704
Alignment:
Q  185 aaaggcgccgtatataggcggaacatcc-aaaataaacacc 224  Q
    ||||||||||||||||| |||||||||| ||||||||||||    
T  26045664 aaaggcgccgtatatagacggaacatccaaaaataaacacc 26045704  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 127 - 224
Target Start/End: Original strand, 43344485 - 43344582
Alignment:
Q  127 tttattaaaaactcgatccctactcaagacgagcagagattagtgaattagagactacaaaggcgccgtatataggcggaacatccaaaataaacacc 224  Q
    |||||| |||||||||||||| ||||||||||  |||||   || ||  |||||||||||| | ||||||||||||||||| |  |||||||||||||    
T  43344485 tttatttaaaactcgatccctgctcaagacgaatagagaccggtaaaccagagactacaaatgtgccgtatataggcggaaaactcaaaataaacacc 43344582  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 224
Target Start/End: Original strand, 26385858 - 26385897
Alignment:
Q  185 aaaggcgccgtatataggcggaacatccaaaataaacacc 224  Q
    |||| |||||||||||||||||||| ||||||||||||||    
T  26385858 aaagacgccgtatataggcggaacacccaaaataaacacc 26385897  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 224
Target Start/End: Original strand, 2339322 - 2339356
Alignment:
Q  190 cgccgtatataggcggaacatccaaaataaacacc 224  Q
    |||||||||||| ||||||||||||||||||||||    
T  2339322 cgccgtatatagacggaacatccaaaataaacacc 2339356  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 220
Target Start/End: Original strand, 1819670 - 1819714
Alignment:
Q  176 agagactacaaaggcgccgtatataggcggaacatccaaaataaa 220  Q
    ||||||||||||||||||||||| | ||||||||  |||||||||    
T  1819670 agagactacaaaggcgccgtatacaagcggaacactcaaaataaa 1819714  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 224
Target Start/End: Original strand, 2331791 - 2331823
Alignment:
Q  192 ccgtatataggcggaacatccaaaataaacacc 224  Q
    |||||||||| ||||||||||||||||||||||    
T  2331791 ccgtatatagacggaacatccaaaataaacacc 2331823  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 224
Target Start/End: Complemental strand, 3478729 - 3478689
Alignment:
Q  185 aaaggcgccgtatataggcggaacatcc-aaaataaacacc 224  Q
    ||||||||||||||||||||||||| || ||||||||||||    
T  3478729 aaaggcgccgtatataggcggaacacccgaaaataaacacc 3478689  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 117 - 224
Target Start/End: Original strand, 33283578 - 33283683
Alignment:
Q  117 aacggcaaattttattaaaaactcgatccctactcaagacgagcagagattagtgaattagagactacaaaggcgccgtatataggcggaacatccaaaa 216  Q
    ||||| ||| |||||||||| |||||||||| || |||||||  ||||||  || ||| ||||| || |||| ||  |||||||| ||||||||||||||    
T  33283578 aacggtaaaatttattaaaatctcgatccctgcttaagacga--agagatcggtaaatcagagattataaagacgttgtatatagacggaacatccaaaa 33283675  T
Q  217 taaacacc 224  Q
    ||||||||    
T  33283676 taaacacc 33283683  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 224
Target Start/End: Original strand, 41231445 - 41231482
Alignment:
Q  187 aggcgccgtatataggcggaacatccaaaataaacacc 224  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  41231445 aggcgccgtatatagacggaacatccaaaataaacacc 41231482  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 187 - 223
Target Start/End: Original strand, 21152700 - 21152736
Alignment:
Q  187 aggcgccgtatataggcggaacatccaaaataaacac 223  Q
    |||||||||||||||||||||||||||||||||||||    
T  21152700 aggcgccgtatataggcggaacatccaaaataaacac 21152736  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 229
Target Start/End: Original strand, 1652577 - 1652621
Alignment:
Q  185 aaaggcgccgtatataggcggaacatccaaaataaacacctacaa 229  Q
    ||||||| ||||||||||||||||| || ||||||||||| ||||    
T  1652577 aaaggcgtcgtatataggcggaacacccgaaataaacacccacaa 1652621  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 224
Target Start/End: Original strand, 17572329 - 17572361
Alignment:
Q  192 ccgtatataggcggaacatccaaaataaacacc 224  Q
    |||||||||||| ||||||||||||||||||||    
T  17572329 ccgtatataggcagaacatccaaaataaacacc 17572361  T

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Target: scaffold0127 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 119 - 222
Target Start/End: Original strand, 21181 - 21284
Alignment:
Q  119 cggcaaattttattaaaaactcgatccctactcaagacgagcagagattagtgaattagagactacaaaggcgccgtatataggcggaacatccaaaata 218  Q
    ||||||| |||||| ||||||||||| || | |||||||| || | |   || ||| |||||||||||||| | ||||||||||||||||| |||||||     
T  21181 cggcaaaatttatttaaaactcgatctctgcacaagacgaacaaaaacctgtaaatcagagactacaaaggtgtcgtatataggcggaacacccaaaatg 21280  T
Q  219 aaca 222  Q
    ||||    
T  21281 aaca 21284  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 189 - 224
Target Start/End: Complemental strand, 31611691 - 31611656
Alignment:
Q  189 gcgccgtatataggcggaacatccaaaataaacacc 224  Q
    ||||||||||||||||||||||||||||||||||||    
T  31611691 gcgccgtatataggcggaacatccaaaataaacacc 31611656  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 224
Target Start/End: Complemental strand, 21030031 - 21029985
Alignment:
Q  178 agactacaaaggcgccgtatataggcggaacatccaaaataaacacc 224  Q
    |||||||||||| ||||||| ||||||||||| ||||||||||||||    
T  21030031 agactacaaaggtgccgtatgtaggcggaacacccaaaataaacacc 21029985  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 119 - 222
Target Start/End: Complemental strand, 5747080 - 5746978
Alignment:
Q  119 cggcaaattttattaaaaactcgatccctactcaagacgagcagagattagtgaattagagactacaaaggcgccgtatataggcggaacatccaaaata 218  Q
    ||||||| |||||| ||||||||||| |||| |||||||| |||| |   ||  || | |||||||||||||| ||||||||||||||||| | |||||     
T  5747080 cggcaaaatttatttaaaactcgatctctacacaagacgaacagaaacctgtagatca-agactacaaaggcgtcgtatataggcggaacacctaaaatg 5746982  T
Q  219 aaca 222  Q
    ||||    
T  5746981 aaca 5746978  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 63
Target Start/End: Complemental strand, 6764954 - 6764913
Alignment:
Q  22 agctcaatgataaaaattatatttgttgccatagtttcacta 63  Q
    ||||||||| |||||||| ||| |||||||||||||||||||    
T  6764954 agctcaatggtaaaaattctatgtgttgccatagtttcacta 6764913  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 224
Target Start/End: Complemental strand, 34093274 - 34093170
Alignment:
Q  120 ggcaaattttattaaaaactcgatccctactcaagacgagcagagattagtgaattagagactacaaaggcgccgtatataggcggaacatccaaaataa 219  Q
    |||||| |||||| ||||||||||| ||||| |||||||  |||||   || ||||| | |||||||| ||  |||||||| || ||| | |||||||||    
T  34093274 ggcaaaatttatttaaaactcgatctctactaaagacgaatagagaccggttaattatatactacaaaagcatcgtatataagctgaatacccaaaataa 34093175  T
Q  220 acacc 224  Q
    |||||    
T  34093174 acacc 34093170  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 123 - 224
Target Start/End: Original strand, 5221438 - 5221543
Alignment:
Q  123 aaattttattaa-aaactcgatccctactcaagacgagcagagattagtgaattagagactacaa---aggcgccgtatataggcggaacatccaaaata 218  Q
    |||||||||||| ||||| | ||| | | |||||||| |||||||| || ||  ||| |||||||   ||||||||||||||||||||||| |||||| |    
T  5221438 aaattttattaataaacttggtccgtgcacaagacgaacagagattggtcaacaagaaactacaacagaggcgccgtatataggcggaacacccaaaaga 5221537  T
Q  219 aacacc 224  Q
    ||||||    
T  5221538 aacacc 5221543  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 17720408 - 17720444
Alignment:
Q  185 aaaggcgccgtatataggcggaacatccaaaataaac 221  Q
    ||||||||||||||||||| ||||| |||||||||||    
T  17720408 aaaggcgccgtatataggcagaacacccaaaataaac 17720444  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 187
Target Start/End: Original strand, 15817011 - 15817072
Alignment:
Q  126 ttttattaaaaactcgatccctactcaagacgagcagagattagtgaattagagactacaaa 187  Q
    |||||||||||||| |||| || ||||||| || ||||||  ||| ||||||||||||||||    
T  15817011 ttttattaaaaactagatctctgctcaagatgaacagagaccagtcaattagagactacaaa 15817072  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 225
Target Start/End: Complemental strand, 34775252 - 34775211
Alignment:
Q  185 aaaggcgccgtatataggcggaacatcc-aaaataaacacct 225  Q
    ||||||||||||||||||||||||| || |||||||||||||    
T  34775252 aaaggcgccgtatataggcggaacacccgaaaataaacacct 34775211  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 225
Target Start/End: Complemental strand, 2878061 - 2878021
Alignment:
Q  185 aaaggcgccgtatataggcggaacatccaaaataaacacct 225  Q
    |||||||  |||||||||||||||||| |||||||||||||    
T  2878061 aaaggcgttgtatataggcggaacatctaaaataaacacct 2878021  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 229
Target Start/End: Original strand, 2987824 - 2987868
Alignment:
Q  186 aaggcgccgtatataggcggaacatcc-aaaataaacacctacaa 229  Q
    ||||||||||||||||||||||||||| |||| ||||||| ||||    
T  2987824 aaggcgccgtatataggcggaacatccgaaaacaaacaccaacaa 2987868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0620 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0620
Description:

Target: scaffold0620; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 224
Target Start/End: Complemental strand, 8608 - 8504
Alignment:
Q  120 ggcaaattttattaaaaactcgatccctactcaagacgagcagagattagtgaattagagactacaaaggcgccgtatataggcggaacatccaaaataa 219  Q
    |||||| |||||| ||||||||||| ||||| |||||||  |||||   || ||||| | |||||||| ||  |||||||| || ||| | |||||||||    
T  8608 ggcaaaatttatttaaaactcgatctctactaaagacgaatagagaccggttaattatatactacaaaagcatcgtatataagctgaatacccaaaataa 8509  T
Q  220 acacc 224  Q
    |||||    
T  8508 acacc 8504  T

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