View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21164_low_16 (Length: 250)
Name: NF21164_low_16
Description: NF21164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21164_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 119; Significance: 7e-61; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 9 - 143
Target Start/End: Original strand, 5307207 - 5307341
Alignment:
| Q |
9 |
gaaatgcagaagcatgaagaaatgaggtattgtctgacctataagtgaatgtcatgtgacttcactcacgttggatataccgaacgtgacttaagtcatg |
108 |
Q |
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| T |
5307207 |
gaaatgaagaagaatgaagaaatgaggtattgtctgacctataaatgaatgtcatgtgacttaactcacgttggatataccgaacgtgacttaagtcatg |
5307306 |
T |
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| Q |
109 |
ttggttatacctcaatgtgacttgactcacgtagg |
143 |
Q |
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| T |
5307307 |
ttggttatacctcaatgtgacttgactcacgtagg |
5307341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 143 - 250
Target Start/End: Original strand, 5309759 - 5309866
Alignment:
| Q |
143 |
gataaatcaagtaaaagctaagtatctgcttttggaatgctttgtaaaaatcctctcatgtgagagttatctatatcatgatgtaaatcaatcaagtagt |
242 |
Q |
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||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
5309759 |
gataaatcaagtaaaagctaagtatgtgattttggaatgctttgtaaaaatcctctcatgtgagagttatctatatcatgatgtaaatcaataaagtagt |
5309858 |
T |
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| Q |
243 |
ctggagta |
250 |
Q |
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| T |
5309859 |
ctggagta |
5309866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 106
Target Start/End: Complemental strand, 40500756 - 40500678
Alignment:
| Q |
28 |
aaatgaggtattgtctgacctataagtgaatgtcatgtgacttcactcacgttggatataccgaacgtgacttaagtca |
106 |
Q |
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| T |
40500756 |
aaatgaggtattgtctgatctttaaatacacgccatgtgacttaacttacgctggatctaccgaatgtgacttaagtca |
40500678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 22 - 143
Target Start/End: Complemental strand, 12025639 - 12025518
Alignment:
| Q |
22 |
atgaagaaatgaggtattgtctgacctataagtgaatgtcatgtgacttcactcacgttggatataccgaacgtgacttaagtcatgttggttatacctc |
121 |
Q |
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| T |
12025639 |
atgaagaaatgaagtgttgtccgacctataaatgaacgccacgtgagttaactcacgttggatgtaccgaacgtgacttaagtcacataggttatacctc |
12025540 |
T |
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| Q |
122 |
aatgtgacttgactcacgtagg |
143 |
Q |
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| T |
12025539 |
aaaatgacttaactcacgtagg |
12025518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 102
Target Start/End: Complemental strand, 27799049 - 27799012
Alignment:
| Q |
65 |
tgacttcactcacgttggatataccgaacgtgacttaa |
102 |
Q |
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| T |
27799049 |
tgacttaactcacgttggatgtaccgaacgtgacttaa |
27799012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 143
Target Start/End: Original strand, 22844069 - 22844203
Alignment:
| Q |
9 |
gaaatgcagaagcatgaagaaatgaggtattgtctgacctataagtgaatgtcatgtgacttcactcacgttggatataccgaacgtgacttaagtcatg |
108 |
Q |
| |
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|||||| ||||| |||||||||||||||||||| |||||| ||| || || || |||| || ||||||||||||| |||||||| | |||||||||| |
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| T |
22844069 |
gaaatgaagaagaatgaagaaatgaggtattgtatgacctttaaatgtatcccacgtgaattaactcacgttggatgtaccgaactttacttaagtcaca |
22844168 |
T |
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| Q |
109 |
ttggttatacctcaatgtgacttgactcacgtagg |
143 |
Q |
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| T |
22844169 |
tatgttatattccaacgtgacttaactcacgtagg |
22844203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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