View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21164_low_5 (Length: 392)
Name: NF21164_low_5
Description: NF21164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21164_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 76 - 316
Target Start/End: Complemental strand, 33615144 - 33614904
Alignment:
| Q |
76 |
ctcaaagtttatgagttgtatatgtggccagtaaccacgtctttcacaaattttctgttcttttcacccaaagacaaaatatgtccnnnnnnnggacaaa |
175 |
Q |
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| T |
33615144 |
ctcaaagtttttgagttgtatatgtggccagtaaccacgtctttcacaaattttctgttcttttcacccaaagacaaaatatgtcctttttttggacaaa |
33615045 |
T |
|
| Q |
176 |
atatccctgcattcttgtgacaattctaaacacaaatagctgttcaaacctctacaataggtaagtatacatgtgcgaatacatcagaccggtctatcgt |
275 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
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| T |
33615044 |
atatccctgcattcttgtgacaattctaaacacaaatagctgttcaaacctctacaataggtaagtatacatgtgccaatagatcagaccggtctatcgt |
33614945 |
T |
|
| Q |
276 |
agattgacagtttaatttaccacacattaagctaggttatg |
316 |
Q |
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|||||||||||||||||||||||||||||||| |||||||| |
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| T |
33614944 |
agattgacagtttaatttaccacacattaagcaaggttatg |
33614904 |
T |
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