View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21164_low_7 (Length: 322)
Name: NF21164_low_7
Description: NF21164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21164_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 20 - 313
Target Start/End: Complemental strand, 5310454 - 5310161
Alignment:
| Q |
20 |
gttaggattaaaaacagaagttttagactcaaaaacaacagaagtatgactcaaacatatagatcatataaactggactgagttttctagctatataagg |
119 |
Q |
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| T |
5310454 |
gttaggattaaaaacagaagttttagactcaaaaacaacagaagtatgactcaaacatatagatcatataaactggactgagttttctagctatataagg |
5310355 |
T |
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| Q |
120 |
aagcatatgttataacactctcttatcctccataagatagtgtcttaacattcaaaactgaatttgaacactccatttgagttatgagaacccaacttaa |
219 |
Q |
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| T |
5310354 |
aagcatatgttataacactctcttatcctccataagatagtgtcttaacattcaaaactgaatttgaacactccatttgagttatgagaacccaacttaa |
5310255 |
T |
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| Q |
220 |
tactatctttcattttttatcttctccttaagtatttcatatgagataatcattaagtttctgaatagtacttaagatatcattgaagaataat |
313 |
Q |
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| T |
5310254 |
tactatctttcattttttatcttctccttaagtatttcatatgagacaatcattaagtttctgaatagtacttaagatatcattgaagaataat |
5310161 |
T |
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Back To:
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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 187
Target Start/End: Original strand, 8152507 - 8152587
Alignment:
| Q |
107 |
tagctatataaggaagcatatgttataacactctcttatcctccataagatagtgtcttaacattcaaaactgaatttgaa |
187 |
Q |
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| T |
8152507 |
tagctatatagagaatcatatgttatgacactttcttatcatccataagatagtattcgaacatccaaaactaaatttgaa |
8152587 |
T |
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