View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21165_high_11 (Length: 499)

Name: NF21165_high_11
Description: NF21165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21165_high_11
NF21165_high_11
[»] chr6 (16 HSPs)
chr6 (62-281)||(2979823-2980045)
chr6 (157-374)||(2983801-2984009)
chr6 (279-405)||(2996414-2996540)
chr6 (406-483)||(2996309-2996386)
chr6 (20-94)||(2986533-2986607)
chr6 (33-94)||(2965335-2965396)
chr6 (200-282)||(2936984-2937065)
chr6 (33-91)||(2983669-2983727)
chr6 (201-279)||(2657344-2657422)
chr6 (33-94)||(2927923-2927984)
chr6 (37-92)||(2658159-2658214)
chr6 (13-77)||(2938222-2938286)
chr6 (338-378)||(2980097-2980137)
chr6 (141-195)||(2987327-2987383)
chr6 (62-94)||(2952798-2952830)
chr6 (62-94)||(2974847-2974879)
[»] chr4 (1 HSPs)
chr4 (325-380)||(38885775-38885830)
[»] scaffold0024 (3 HSPs)
scaffold0024 (212-273)||(33386-33447)
scaffold0024 (226-282)||(37176-37232)
scaffold0024 (141-195)||(42826-42880)
[»] chr7 (2 HSPs)
chr7 (141-201)||(3346351-3346411)
chr7 (145-202)||(3340545-3340602)


Alignment Details
Target: chr6 (Bit Score: 153; Significance: 7e-81; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 62 - 281
Target Start/End: Original strand, 2979823 - 2980045
Alignment:
Q  62 aaagcaacttgatcatgttgtattcttgttgaatattttctg---gtttaataattatttttggaagagatgtgctatatttttgttgaatgttttccgg 158  Q
    |||||||||| ||||||||| ||| |||||||||||||||||   |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  2979823 aaagcaactttatcatgttgcattgttgttgaatattttctgcaggtttaacaattatttttggaagagatgtactatatttttgttgaatgttttccgg 2979922  T
Q  159 tattatcattggtttcaaaaaggttgaaaatcggttttcatgtaatatttcatacccaagaaagatataaaattattacaaccaattaattcatataaac 258  Q
    ||| |||||||||||| ||||||||||||| |||||| | |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |    
T  2979923 tatcatcattggtttcgaaaaggttgaaaaacggtttccgtgtaatattttatacccaagaaagatataaaaatattacaaccaattaattcatataagc 2980022  T
Q  259 caacgaaccaaaattctccaata 281  Q
    ||| |||||||||||||||||||    
T  2980023 caatgaaccaaaattctccaata 2980045  T

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Target: chr6; HSP #2
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 157 - 374
Target Start/End: Original strand, 2983801 - 2984009
Alignment:
Q  157 ggtattatcattggtttcaaaaaggttgaaaatcggttttcatgtaatatttcatacccaagaaagatataaaattattacaaccaattaattcatataa 256  Q
    ||||||||| |||||||| ||||||||||||| |  ||| | |||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||    
T  2983801 ggtattatcgttggtttcgaaaaggttgaaaaacaatttccgtgtaatattttatacccatgaaagatataaaaatattacaaccaattaattcatataa 2983900  T
Q  257 accaacgaaccaaaattctccaatacagtaatacttttgaagcattgataattaagtagaggagtaaaaggtgcagcaaacctaggctcataagcaaaac 356  Q
    ||||||||||||||||||||||| |         |||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||     
T  2983901 accaacgaaccaaaattctccaaca---------ttttgaagaattgataattaagtagaggagtaacaggtgtagcaaacctaggctcataagcaaaat 2983991  T
Q  357 catgcaactcaaacccat 374  Q
    ||||||||||||||||||    
T  2983992 catgcaactcaaacccat 2984009  T

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Target: chr6; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 279 - 405
Target Start/End: Complemental strand, 2996540 - 2996414
Alignment:
Q  279 atacagtaatacttttgaagcattgataattaagtagaggagtaaaaggtgcagcaaacctaggctcataagcaaaaccatgcaactcaaacccatcata 378  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  2996540 atacagtaatacttttgaagcattgataattaagtagaggagtaaaaggttcagcaaacctaggctcataagcaagaccatgcaactcaaacccatcata 2996441  T
Q  379 acaaaaatatagtgcagctgcgtgtat 405  Q
    || ||| || | ||||  |||||||||    
T  2996440 accaaagtagaatgcaagtgcgtgtat 2996414  T

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Target: chr6; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 406 - 483
Target Start/End: Complemental strand, 2996386 - 2996309
Alignment:
Q  406 ggttggtggtggtagttttttggagttttcaagaaggcgtctctttatgaaatctttcatctccttttgccttggtgg 483  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||    
T  2996386 ggttggtggtggtagttttttagagttttcaagaaggcgtctctttatggaatctttcgtctccttttgcctttgtgg 2996309  T

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Target: chr6; HSP #5
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 20 - 94
Target Start/End: Original strand, 2986533 - 2986607
Alignment:
Q  20 tttgtgtgttttgttagattgaaattgtaatttcatattaataaagcaacttgatcatgttgtattcttgttgaa 94  Q
    ||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||| ||||||||    
T  2986533 tttgtgtgttttgttagatcgaaattgtaatttcatataaataaatcaacttgatcatgttgtattgttgttgaa 2986607  T

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Target: chr6; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 33 - 94
Target Start/End: Original strand, 2965335 - 2965396
Alignment:
Q  33 ttagattgaaattgtaatttcatattaataaagcaacttgatcatgttgtattcttgttgaa 94  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  2965335 ttagattgaaattgtaatttcatataaataaagcaacttgatcatgttgtattgttgttgaa 2965396  T

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Target: chr6; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 200 - 282
Target Start/End: Original strand, 2936984 - 2937065
Alignment:
Q  200 gtaatatttcatacccaagaaagatataaaattattacaaccaattaattcatataaaccaacgaaccaaaattctccaatac 282  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||| || |||||||||| ||| ||||    
T  2936984 gtaatattttatacccaagaaagatataaaattatt-caaccaattaatgcatataaacctaccaaccaaaattttccgatac 2937065  T

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Target: chr6; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 33 - 91
Target Start/End: Original strand, 2983669 - 2983727
Alignment:
Q  33 ttagattgaaattgtaatttcatattaataaagcaacttgatcatgttgtattcttgtt 91  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  2983669 ttagattgaaattgtaatttcatataaataaagcaacttgatcatgttgtattgttgtt 2983727  T

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Target: chr6; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 201 - 279
Target Start/End: Complemental strand, 2657422 - 2657344
Alignment:
Q  201 taatatttcatacccaagaaagatataaaattattacaaccaattaattcatataaaccaacgaaccaaaattctccaa 279  Q
    |||||||| ||||||||||||||||||||||||||| |||||  |||| ||||||||||||| ||| ||| ||||||||    
T  2657422 taatattttatacccaagaaagatataaaattattagaaccacgtaatgcatataaaccaaccaacaaaatttctccaa 2657344  T

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Target: chr6; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 33 - 94
Target Start/End: Original strand, 2927923 - 2927984
Alignment:
Q  33 ttagattgaaattgtaatttcatattaataaagcaacttgatcatgttgtattcttgttgaa 94  Q
    ||||||||||||| ||||||||||| |||||| |||||||||||||||||||| ||||||||    
T  2927923 ttagattgaaattataatttcatataaataaatcaacttgatcatgttgtattgttgttgaa 2927984  T

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Target: chr6; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 37 - 92
Target Start/End: Complemental strand, 2658214 - 2658159
Alignment:
Q  37 attgaaattgtaatttcatattaataaagcaacttgatcatgttgtattcttgttg 92  Q
    ||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||    
T  2658214 attgaaattgtaatttcatataaataaagcaacttgatcatgttctattgttgttg 2658159  T

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Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 2938222 - 2938286
Alignment:
Q  13 tcatcattttgtgtgttttgttagattgaaattgtaatttcatattaataaagcaacttgatcat 77  Q
    |||| |||||||||||| |||||||| |||| |||||||| |||| |||||| ||||||||||||    
T  2938222 tcattattttgtgtgttgtgttagatcgaaaatgtaatttgatataaataaaacaacttgatcat 2938286  T

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Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 338 - 378
Target Start/End: Original strand, 2980097 - 2980137
Alignment:
Q  338 ctaggctcataagcaaaaccatgcaactcaaacccatcata 378  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  2980097 ctaggttcataagcaaaaccatgcaactcaaacccatcata 2980137  T

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Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 195
Target Start/End: Original strand, 2987327 - 2987383
Alignment:
Q  141 ttgttgaatgttttccggtattatc--attggtttcaaaaaggttgaaaatcggttt 195  Q
    |||||||||||||||| |||||||   ||||||||| ||||||||||||| ||||||    
T  2987327 ttgttgaatgttttccagtattatatgattggtttcgaaaaggttgaaaaacggttt 2987383  T

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Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 62 - 94
Target Start/End: Original strand, 2952798 - 2952830
Alignment:
Q  62 aaagcaacttgatcatgttgtattcttgttgaa 94  Q
    |||||||||||||||||||||||| ||||||||    
T  2952798 aaagcaacttgatcatgttgtattgttgttgaa 2952830  T

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Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 62 - 94
Target Start/End: Original strand, 2974847 - 2974879
Alignment:
Q  62 aaagcaacttgatcatgttgtattcttgttgaa 94  Q
    |||||||||||||||||||||||| ||||||||    
T  2974847 aaagcaacttgatcatgttgtattgttgttgaa 2974879  T

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Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 325 - 380
Target Start/End: Original strand, 38885775 - 38885830
Alignment:
Q  325 aggtgcagcaaacctaggctcataagcaaaaccatgcaactcaaacccatcataac 380  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  38885775 aggtgtagccaacctaggctcataagcaaaaccatgcaactcaaacccatcataac 38885830  T

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Target: scaffold0024 (Bit Score: 46; Significance: 5e-17; HSPs: 3)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 212 - 273
Target Start/End: Complemental strand, 33447 - 33386
Alignment:
Q  212 acccaagaaagatataaaattattacaaccaattaattcatataaaccaacgaaccaaaatt 273  Q
    ||||||||||||||||||| ||||||||||||||||| |||||| |||||| ||||||||||    
T  33447 acccaagaaagatataaaaatattacaaccaattaatgcatatagaccaaccaaccaaaatt 33386  T

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Target: scaffold0024; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 226 - 282
Target Start/End: Complemental strand, 37232 - 37176
Alignment:
Q  226 taaaattattacaaccaattaattcatataaaccaacgaaccaaaattctccaatac 282  Q
    ||||| ||||||||||||||||| |||||| |||||| |||||||||| ||| ||||    
T  37232 taaaaatattacaaccaattaatgcatatagaccaaccaaccaaaattatccgatac 37176  T

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Target: scaffold0024; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 141 - 195
Target Start/End: Complemental strand, 42880 - 42826
Alignment:
Q  141 ttgttgaatgttttccggtattatcattggtttcaaaaaggttgaaaatcggttt 195  Q
    |||||||||||||||| |||||||||||| |||  |||||||| |||| ||||||    
T  42880 ttgttgaatgttttcctgtattatcattgattttgaaaaggtttaaaaacggttt 42826  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 141 - 201
Target Start/End: Original strand, 3346351 - 3346411
Alignment:
Q  141 ttgttgaatgttttccggtattatcattggtttcaaaaaggttgaaaatcggttttcatgt 201  Q
    |||||||||||||| |||||| |||||||||||| ||||||||||||| |||||| |||||    
T  3346351 ttgttgaatgtttttcggtataatcattggtttcgaaaaggttgaaaaacggtttccatgt 3346411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 202
Target Start/End: Original strand, 3340545 - 3340602
Alignment:
Q  145 tgaatgttttccggtattatcattggtttcaaaaaggttgaaaatcggttttcatgta 202  Q
    |||||||||| || ||||||||||||||||  |||||||| ||| |||||| ||||||    
T  3340545 tgaatgtttttcgatattatcattggtttcggaaaggttgtaaaacggtttccatgta 3340602  T

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