View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21165_high_13 (Length: 466)
Name: NF21165_high_13
Description: NF21165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21165_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 10 - 421
Target Start/End: Original strand, 50338214 - 50338625
Alignment:
| Q |
10 |
gcataggcagggcgaggaggatgcaagttccaaatgtgaatatgcagcatagtgttagtactaatctcagtcatttggcttaattgactgcttcatcttt |
109 |
Q |
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| T |
50338214 |
gcataggcagggcgaggaggatgcaagttccaaatgttaatatgcagcatagtgttagtactaatctcagtcatttggcttaattgactgcttcatcttt |
50338313 |
T |
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| Q |
110 |
atgaaaattgttttgataatttgcaatctaatcttctgtggtgctgttttgttttgtttatttgtacagattatgattgaagcagttgaaaatcatatgc |
209 |
Q |
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| T |
50338314 |
atgaaaattgttttgataatttgtaatctaagcttctgtggtgctgttttgttttgtttatttgtacagattatgattgaagcagttgaaaatcatatgc |
50338413 |
T |
|
| Q |
210 |
ctgaaaccattataattgatgaaattggaacagaacttgaagcattagcagcaagtaccattgctcaaagaggagttcaattggttggaacggcacatgg |
309 |
Q |
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| T |
50338414 |
ctgaaaccattataattgatgaaattggaacagaacttgaagcattagcagcaagtaccattgctcaaagaggagttcaattggttggaacggcacatgg |
50338513 |
T |
|
| Q |
310 |
aacaaccattgagagcataatgaagaatccttatcttcagatccttgttggtggtatagaggtgcaaaagctactcttatttattttccttcaagtttat |
409 |
Q |
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| T |
50338514 |
aacaaccattgaaagcataatgaagaatccttatcttcagatccttgttggtggtatagaggtgcaaaagctactcttatttattttccttcaagtttat |
50338613 |
T |
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| Q |
410 |
gatttataataa |
421 |
Q |
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| T |
50338614 |
gatttataataa |
50338625 |
T |
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Back To:
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Target: chr3 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 10 - 91
Target Start/End: Complemental strand, 55029925 - 55029844
Alignment:
| Q |
10 |
gcataggcagggcgaggaggatgcaagttccaaatgtgaatatgcagcatagtgttagtactaatctcagtcatttggctta |
91 |
Q |
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|||| |||| ||| |||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||| |
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| T |
55029925 |
gcattggcaaggcaaggaggatgcaagttccaaatgtgaatatgcagcattatgttggtactaatctcactcatttggctta |
55029844 |
T |
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