View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21165_high_15 (Length: 459)
Name: NF21165_high_15
Description: NF21165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21165_high_15 |
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Alignment Details
Target: chr7 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 12 - 439
Target Start/End: Original strand, 7451379 - 7451794
Alignment:
| Q |
12 |
caaaggccaagttgatagcagacaaatatatcctttccaagtagggaaggaaaatagtctgacaacgggtagtagagtctgagaaggatactaatctatc |
111 |
Q |
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| T |
7451379 |
caaaggccaagttgaatgcagacaaatatatcctttccaagtagggaaggaaaatagtctgacaacgggtagtagagtctgagaaggatactaacctatc |
7451478 |
T |
|
| Q |
112 |
tgtacccttaacaatgaaaactaaataaaggaacattgatttaaatagtgtttgattgaggaaaatggaggggaggaaaagttataaagtaaagtgtctt |
211 |
Q |
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| T |
7451479 |
tgtacccttaacaatgaaaactaaataaaggaacattgatttaaatagtgtttgattgaggaaaatggaggggaggaatagttataaagtaaagtgtctt |
7451578 |
T |
|
| Q |
212 |
gtttttagttcaaaaattggaggggaagggaactaagggggccaaaatccgggccaaaatccctcgtctctcaatttcggccctgtccaatattagaagg |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||| |
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| T |
7451579 |
gtttttagttcaaaaattggaggggaagggaactaagg------------gggccaaaatccctcatctctcaattttggccctgtccaatattagaagg |
7451666 |
T |
|
| Q |
312 |
acttgaaatggcgagataatgtgctttaaatattctcgggagtatattgactaaaatgacctaactgacatcaagaacttcaaaactatccttaaccctc |
411 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7451667 |
acttgaaatggtgagataatgtgctttaaatattctcgggagtatattgactaaaatgacctaactgacatcaagaacttcaaaactatccttaaccctc |
7451766 |
T |
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| Q |
412 |
gccaccattgcatgatgtcctttactac |
439 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
7451767 |
gccaccattgcatgatgtcctttactac |
7451794 |
T |
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