View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21165_high_17 (Length: 444)

Name: NF21165_high_17
Description: NF21165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21165_high_17
NF21165_high_17
[»] chr6 (1 HSPs)
chr6 (372-417)||(7310463-7310508)
[»] chr2 (2 HSPs)
chr2 (350-425)||(11316257-11316331)
chr2 (357-407)||(32470300-32470350)
[»] chr8 (3 HSPs)
chr8 (67-120)||(22552201-22552254)
chr8 (370-407)||(32694264-32694301)
chr8 (370-407)||(32797491-32797528)
[»] chr5 (1 HSPs)
chr5 (370-407)||(30858248-30858285)
[»] chr3 (1 HSPs)
chr3 (372-417)||(38241246-38241291)
[»] scaffold0118 (1 HSPs)
scaffold0118 (370-407)||(42646-42683)
[»] chr4 (1 HSPs)
chr4 (241-269)||(33962309-33962337)


Alignment Details
Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 372 - 417
Target Start/End: Complemental strand, 7310508 - 7310463
Alignment:
Q  372 gatgatgttgctgttgaattgatgacgatgttgttgctgctattgt 417  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||    
T  7310508 gatgatgttgctgttgaattgatgatgttgttgttgctgctattgt 7310463  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 350 - 425
Target Start/End: Complemental strand, 11316331 - 11316257
Alignment:
Q  350 atggttcattttgataactagtgatgatgttgctgttgaattgatgacgatgttgttgctgctattgtataatctg 425  Q
    |||||| |||||||||  | |||||||||||| |||||||||||||| | |||||||| ||||||||| |||||||    
T  11316331 atggtttattttgatagatggtgatgatgttgttgttgaattgatgatgttgttgttg-tgctattgtttaatctg 11316257  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 407
Target Start/End: Original strand, 32470300 - 32470350
Alignment:
Q  357 attttgataactagtgatgatgttgctgttgaattgatgacgatgttgttg 407  Q
    |||||||||  | |||||||||||| |||||||||||||| ||||||||||    
T  32470300 attttgatagatggtgatgatgttgttgttgaattgatgatgatgttgttg 32470350  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 67 - 120
Target Start/End: Complemental strand, 22552254 - 22552201
Alignment:
Q  67 ggcgttggggttacgactgcgactgcagcgtttgttgcggtggttggaagggga 120  Q
    |||||||||||||||||| ||||  |  ||||||||||||||||||||||||||    
T  22552254 ggcgttggggttacgactacgacgacgacgtttgttgcggtggttggaagggga 22552201  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 370 - 407
Target Start/End: Complemental strand, 32694301 - 32694264
Alignment:
Q  370 gtgatgatgttgctgttgaattgatgacgatgttgttg 407  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  32694301 gtgatgatgttgctgttgaattgatgatgatgttgttg 32694264  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 370 - 407
Target Start/End: Complemental strand, 32797528 - 32797491
Alignment:
Q  370 gtgatgatgttgctgttgaattgatgacgatgttgttg 407  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  32797528 gtgatgatgttgctgttgaattgatgatgatgttgttg 32797491  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 370 - 407
Target Start/End: Complemental strand, 30858285 - 30858248
Alignment:
Q  370 gtgatgatgttgctgttgaattgatgacgatgttgttg 407  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  30858285 gtgatgatgttgctgttgaattgatgatgatgttgttg 30858248  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 372 - 417
Target Start/End: Complemental strand, 38241291 - 38241246
Alignment:
Q  372 gatgatgttgctgttgaattgatgacgatgttgttgctgctattgt 417  Q
    |||||||||| |||||||||||||| | ||||||||||||||||||    
T  38241291 gatgatgttgttgttgaattgatgatgttgttgttgctgctattgt 38241246  T

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Target: scaffold0118 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 407
Target Start/End: Complemental strand, 42683 - 42646
Alignment:
Q  370 gtgatgatgttgctgttgaattgatgacgatgttgttg 407  Q
    |||||||||||| |||||||||||||| ||||||||||    
T  42683 gtgatgatgttgttgttgaattgatgatgatgttgttg 42646  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 269
Target Start/End: Complemental strand, 33962337 - 33962309
Alignment:
Q  241 aaaaaatgggggagattgcagcatttgtt 269  Q
    |||||||||||||||||||||||||||||    
T  33962337 aaaaaatgggggagattgcagcatttgtt 33962309  T

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