View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21165_high_31 (Length: 351)
Name: NF21165_high_31
Description: NF21165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21165_high_31 |
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Alignment Details
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 41687606 - 41687938
Alignment:
| Q |
1 |
ttgagttcgagtgaccatagaaatttggaagacatgagcattcatgaactggtttctgtgttacgcacatcgtttctaacagaagtctttgataatgttg |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
41687606 |
ttgagttcgagtgaccatagaaatttggaagacatgagcattcatgaactggtttctgtgttacgcacatcgtttctaacagaagactttgataatgttg |
41687705 |
T |
|
| Q |
101 |
aagaggttttagtgactagagataagaaactgcaaacgaaaattctacatcttcaagagaagtttgaaatggaaaaactaacaaggtttcaagttgagga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41687706 |
aagaggttttagtgactagagataagaaactgcaaacgaaaattctacatcttcaagagaagtttgaaatggaaaaactaacaaggtttcaagttgagga |
41687805 |
T |
|
| Q |
201 |
agatgtgaggaaaagaggggaactatgtgaaagagggaaaagagcacaacaaaattatgaaacattgttgaaggaagtcaaacaaaaaactagtttgatt |
300 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
41687806 |
agatgtgaggaaaagagaggaactatgtgaaagagggaaaagagcacaacaaaattatgaagcattgttgaaggaagtcaaacaaaaaactagtttgatt |
41687905 |
T |
|
| Q |
301 |
gagagagacaacatcggaaagccaagaaagaaa |
333 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
41687906 |
gagagagacaacatcggaaagccaagaaagaaa |
41687938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 107 - 332
Target Start/End: Complemental strand, 41686620 - 41686395
Alignment:
| Q |
107 |
ttttagtgactagagataagaaactgcaaacgaaaattctacatcttcaagagaagtttgaaatggaaaaactaacaaggtttcaagttgaggaagatgt |
206 |
Q |
| |
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||||| ||| |||| | |||||||||||| | ||||||||||||||||||||||||||||| |||| | |||||| |||||||||| |||||||||| | |
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| T |
41686620 |
ttttaatgagtagatacaagaaactgcaagctgaaattctacatcttcaagagaagtttgaattggagagactaacgaggtttcaagctgaggaagattt |
41686521 |
T |
|
| Q |
207 |
gaggaaaagaggggaactatgtgaaagagggaaaagagcacaacaaaattatgaaacattgttgaaggaagtcaaacaaaaaactagtttgattgagaga |
306 |
Q |
| |
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||| ||||||| |||||| ||||||||||||| |||||||||| | |||||||||| ||||||||||||||| || |||||||||||||| ||| ||| |
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| T |
41686520 |
gagaaaaagagaggaactttgtgaaagagggataagagcacaaaataattatgaaaaattgttgaaggaagttaaggaaaaaactagtttgggtgataga |
41686421 |
T |
|
| Q |
307 |
gacaacatcggaaagccaagaaagaa |
332 |
Q |
| |
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|||| ||| ||| ||| ||||||||| |
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| T |
41686420 |
gacatcattggagagctaagaaagaa |
41686395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 12 - 278
Target Start/End: Complemental strand, 41659720 - 41659454
Alignment:
| Q |
12 |
tgaccatagaaatttggaagacatgagcattcatgaactggtttctgtgttacgcacatcgtttctaacagaagtctttgataatgttgaagaggtttta |
111 |
Q |
| |
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|||||||||||| |||||||||||||||||||| ||||| ||||| |||| || ||| |||||| |||||| |||||| | ||||| |||||||| |
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| T |
41659720 |
tgaccatagaaacttggaagacatgagcattcaggaacttgtttcggtgtcgcgtacagcgtttcggacagaacagtttgatgaacttgaaaaggtttta |
41659621 |
T |
|
| Q |
112 |
gtgactagagataagaaactgcaaacgaaaattctacatcttcaagagaagtttgaaatggaaaaactaacaaggtttcaagttgaggaagatgtgagga |
211 |
Q |
| |
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|||| |||| || ||| ||| || || | ||||||||| |||||||||||||||| |||| | ||| | |||||||||| ||| |||||| |||| | |
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| T |
41659620 |
gtgagtagatatgagagactacacacagagattctacattttcaagagaagtttgacttggagagactgatgaggtttcaagctgaagaagatttgagaa |
41659521 |
T |
|
| Q |
212 |
aaagaggggaactatgtgaaagagggaaaagagcacaacaaaattatgaaacattgttgaaggaagt |
278 |
Q |
| |
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|||||| ||||||||| |||||||| ||||| ||||| |||||||||||||||||| ||||||| |
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| T |
41659520 |
aaagagaggaactatgcgaaagaggaaaaagggcacagagtaattatgaaacattgttggaggaagt |
41659454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 9 - 278
Target Start/End: Complemental strand, 41709096 - 41708827
Alignment:
| Q |
9 |
gagtgaccatagaaatttggaagacatgagcattcatgaactggtttctgtgttacgcacatcgtttctaacagaagtctttgataatgttgaagaggtt |
108 |
Q |
| |
|
||||||||||| || ||||||| ||||| |||||| |||||||| | ||||| || ||| | ||||| |||||| ||||||| ||||||||||| |
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| T |
41709096 |
gagtgaccatatgaacttggaaggcatgaacattcaggaactggtgttggtgttgcgaacaacatttctgacagaacagtttgatagaattgaagaggtt |
41708997 |
T |
|
| Q |
109 |
ttagtgactagagataagaaactgcaaacgaaaattctacatcttcaagagaagtttgaaatggaaaaactaacaaggtttcaagttgaggaagatgtga |
208 |
Q |
| |
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||||||| |||| |||||| ||| ||| | ||| || |||||||||||||| |||||||||| ||| ||| |||||||||| ||||||||| ||| |
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| T |
41708996 |
ttagtgagtagatataagagactagaaaatgagattatagatcttcaagagaaggttgaaatggagaaaaaaacgaggtttcaagccgaggaagatttga |
41708897 |
T |
|
| Q |
209 |
ggaaaagaggggaactatgtgaaagagggaaaagagcacaacaaaattatgaaacattgttgaaggaagt |
278 |
Q |
| |
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| ||||||| |||||| ||||||| |||||||||||||||| | |||||||||| || ||||||||||| |
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| T |
41708896 |
gaaaaagagaggaactgtgtgaaaaagggaaaagagcacaaaataattatgaaaagttattgaaggaagt |
41708827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 25 - 278
Target Start/End: Complemental strand, 41718152 - 41717899
Alignment:
| Q |
25 |
ttggaagacatgagcattcatgaactggtttctgtgttacgcacatcgtttctaacagaagtctttgataatgttgaagaggttttagtgactagagata |
124 |
Q |
| |
|
||||||| ||||| | |||| |||||||| || ||||| || ||| | ||||| ||||||| ||||||| |||||| | ||||||||| |||| ||| |
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|
| T |
41718152 |
ttggaaggcatgaacgttcaggaactggtgtcggtgttgcgaacagcatttctgacagaagaatttgatagaattgaagggattttagtgagtagatata |
41718053 |
T |
|
| Q |
125 |
agaaactgcaaacgaaaattctacatcttcaagagaagtttgaaatggaaaaactaacaaggtttcaagttgaggaagatgtgaggaaaagaggggaact |
224 |
Q |
| |
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||| ||| ||| | ||| || |||||||||||||| |||||||||| ||| |||||||||||||| ||||||||| |||| ||||||| |||||| |
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| T |
41718052 |
agagactagaaaatgagattatagatcttcaagagaaggttgaaatggagaaaaaaacaaggtttcaagccgaggaagatttgagaaaaagagaggaact |
41717953 |
T |
|
| Q |
225 |
atgtgaaagagggaaaagagcacaacaaaattatgaaacattgttgaaggaagt |
278 |
Q |
| |
|
||||||| |||||||||||||||| | |||||||||| || ||||||||||| |
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|
| T |
41717952 |
gtgtgaaaaagggaaaagagcacaaaataattatgaaaagttattgaaggaagt |
41717899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 276
Target Start/End: Original strand, 14690703 - 14690954
Alignment:
| Q |
25 |
ttggaagacatgagcattcatgaactggtttctgtgttacgcacatcgtttctaacagaagtctttgataatgttgaagaggttttagtgactagagata |
124 |
Q |
| |
|
|||||| |||||||||||||||| ||||||| || || || ||| ||| || ||||||| ||||||| ||||||||| ||||||| | ||||| | |
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|
| T |
14690703 |
ttggaaaacatgagcattcatgacttggtttcagttttgcgtacagcgtatcaaacagaacaatttgatagtgttgaagaaattttagttagcagagaca |
14690802 |
T |
|
| Q |
125 |
agaaactgcaaacgaaaattctacatcttcaagagaagtttgaaatggaaaaactaacaaggtttcaagttgaggaagatgtgaggaaaagaggggaact |
224 |
Q |
| |
|
||||||| |||| | |||| | ||||| ||||||||||||| ||||| | || | | ||||| |||| |||||||||| ||| ||| || | |||||| |
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|
| T |
14690803 |
agaaactcaaaacagagattcaaaatctttaagagaagtttgatatggagagacaagctaggttacaagctgaggaagatttgaagaagagtgaggaact |
14690902 |
T |
|
| Q |
225 |
atgtgaaagagggaaaagagcacaacaaaattatgaaacattgttgaaggaa |
276 |
Q |
| |
|
||||| |||| |||| ||||| | |||||||||| || ||||| |||| |
|
|
| T |
14690903 |
gtgtgagagagctaaaatggcacagaataattatgaaaaatcgttgatggaa |
14690954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 278
Target Start/End: Original strand, 14682416 - 14682508
Alignment:
| Q |
186 |
gtttcaagttgaggaagatgtgaggaaaagaggggaactatgtgaaagagggaaaagagcacaacaaaattatgaaacattgttgaaggaagt |
278 |
Q |
| |
|
||||||| ||||||||| ||||||| || | |||| | ||||| |||||||||| |||||| | |||||||||| ||||||||||||||| |
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|
| T |
14682416 |
gtttcaatctgaggaagaattgaggaagagggaggaaatgtgtgagagagggaaaaaagcacagaataattatgaaaaattgttgaaggaagt |
14682508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 131
Target Start/End: Original strand, 14682280 - 14682385
Alignment:
| Q |
26 |
tggaagacatgagcattcatgaactggtttctgtgttacgcacatcgtttctaacagaagtctttgataatgttgaagaggttttagtgactagagataa |
125 |
Q |
| |
|
||||| ||||||||||||| || ||||||| || || || ||| ||||||| |||||| ||||||| ||||||||| ||||||||| |||| || | |
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|
| T |
14682280 |
tggaaaacatgagcattcaagatttggtttcagttttgcgtacagcgtttctgacagaacaatttgatagtgttgaagaaattttagtgagtagatatga |
14682379 |
T |
|
| Q |
126 |
gaaact |
131 |
Q |
| |
|
|||||| |
|
|
| T |
14682380 |
gaaact |
14682385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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