View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21165_high_40 (Length: 311)
Name: NF21165_high_40
Description: NF21165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21165_high_40 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 43 - 292
Target Start/End: Original strand, 41687350 - 41687594
Alignment:
| Q |
43 |
agtggcaaaagaaactatattgaaataaaatgaattaattattgaagtgttggtaatataagcaaagttgattttgggaatagaaacaactcggttactt |
142 |
Q |
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| T |
41687350 |
agtggcaaaagaaactatattgaaataaaatgaattaattattgaagtgttggtaatataagcaaagttgattttgggaatagaaacaactcggttactt |
41687449 |
T |
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| Q |
143 |
ccactacttcatacttgattccacactcttctttcaatacagcgttctcatcgtttcttcttccatcttcttcttttccgctgttccaacactgtttctg |
242 |
Q |
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| T |
41687450 |
cc---acttcatacttcattccacactcttctttcaatac--cgttctcatcgtttcttcttccatcttcttcttttccgctgctccaacactgtttccg |
41687544 |
T |
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| Q |
243 |
tctcatttcattccacaacacaacacatcatatggagcatcaacccaaaa |
292 |
Q |
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| T |
41687545 |
tctcatttcattccacaacacaacacatcatatggagcatcaacccaaaa |
41687594 |
T |
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