View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21165_high_42 (Length: 307)
Name: NF21165_high_42
Description: NF21165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21165_high_42 |
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Alignment Details
Target: chr5 (Bit Score: 143; Significance: 4e-75; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 140 - 290
Target Start/End: Original strand, 35425556 - 35425706
Alignment:
| Q |
140 |
ctactcaatcctcatgttggtcaaagtccgaatttgacacattcatagagctgtaattatatttacatagcagacacatgctttaacttagttgttataa |
239 |
Q |
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| T |
35425556 |
ctactcaatcctcatgttggtcaaagtccgaatttgatacattcatagagctgtaattatatttacatagcagacacatgctttaacttagttgttataa |
35425655 |
T |
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| Q |
240 |
ggagcaggttaacattgaaaactatataatatgaggtgagagagacaagct |
290 |
Q |
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| T |
35425656 |
ggagcaggttaacattgaaaactatataatatgaggtgagagaaacaagct |
35425706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 35425417 - 35425488
Alignment:
| Q |
1 |
caatattattggttgagtttgtttgatcggaagactggtatttatttttcttaaatacctcatgtgctggat |
72 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35425417 |
caatattattggttgagtttgtttgatcggaagactggtatttatttttcttaaatacctcatgtgctggat |
35425488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 143; Significance: 4e-75; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 140 - 282
Target Start/End: Original strand, 46710965 - 46711107
Alignment:
| Q |
140 |
ctactcaatcctcatgttggtcaaagtccgaatttgacacattcatagagctgtaattatatttacatagcagacacatgctttaacttagttgttataa |
239 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46710965 |
ctactcaatcctcatgttggtcaaagtccgaatttgacacattcatagagctgtaattatatttacatagcagacacatgctttaacttagttgttataa |
46711064 |
T |
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| Q |
240 |
ggagcaggttaacattgaaaactatataatatgaggtgagaga |
282 |
Q |
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| T |
46711065 |
ggagcaggttaacattgaaaactatataatatgaggtgagaga |
46711107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 46710826 - 46710897
Alignment:
| Q |
1 |
caatattattggttgagtttgtttgatcggaagactggtatttatttttcttaaatacctcatgtgctggat |
72 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46710826 |
caatattattggttgagtttgtttgatcggaagactggtatttatttttcttaaatacctcatgtgctggat |
46710897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 150 - 290
Target Start/End: Original strand, 24138144 - 24138284
Alignment:
| Q |
150 |
ctcatgttggtcaaagtccgaatttgacacattcatagagctgtaattatatttacatagcagacacatgctttaacttagttgttataaggagcaggtt |
249 |
Q |
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|||||||||||| |||||| ||| ||||||||||||| |||| || || |||| ||| || |||||| |||||| | ||| | |||| || ||| | | |
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| T |
24138144 |
ctcatgttggtccaagtccaaatctgacacattcatacagctatacgtacatttgtatatcatacacatactttaa-taagtgggtatagggtgcatgct |
24138242 |
T |
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| Q |
250 |
aacattgaaaacta-tataatatgaggtgagagagacaagct |
290 |
Q |
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| T |
24138243 |
agcattgaaaactaatataatatgaggtgagagagacaagct |
24138284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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