View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21165_high_45 (Length: 300)

Name: NF21165_high_45
Description: NF21165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21165_high_45
NF21165_high_45
[»] chr2 (3 HSPs)
chr2 (18-289)||(5821021-5821292)
chr2 (22-216)||(5764101-5764295)
chr2 (31-216)||(5833533-5833718)
[»] chr6 (1 HSPs)
chr6 (31-216)||(29331236-29331421)
[»] chr1 (2 HSPs)
chr1 (48-208)||(38527192-38527352)
chr1 (48-208)||(38568493-38568653)
[»] chr3 (1 HSPs)
chr3 (35-216)||(49738538-49738719)
[»] chr4 (3 HSPs)
chr4 (152-208)||(51198046-51198102)
chr4 (150-216)||(51211570-51211636)
chr4 (152-208)||(51155531-51155587)


Alignment Details
Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 18 - 289
Target Start/End: Original strand, 5821021 - 5821292
Alignment:
Q  18 aattttttgtttgatgctgcagaggtagcatgttggatggtgacaggagaaagacaagctgcaaggattcgtggcttgtacttgaaaactatactaaagc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5821021 aattttttgtttgatgctgcagaggtagcatgttggatggtgacaggagaaagacaagctgcaaggattcgtggcttgtacttgaaaactatactaaagc 5821120  T
Q  118 aagatatttcctactttgacactgaagcaaccagtggagaggttattggaagaatgtctggtgataccattctcattcaagatgccatgggagaaaaggc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5821121 aagatatttcctactttgacactgaagcaaccagtggagaggttattggaagaatgtctggtgataccattctcattcaagatgccatgggagaaaaggc 5821220  T
Q  218 aagtttctttcttgtatgacaagttaacaccatgcatgcatgtatcatgttcgtcaaaggatttacacctat 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  5821221 aagtttctttcttgtatgacaagttaacaccatgcatgcatgtatcatgttcgtctaaggatttacatctat 5821292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 22 - 216
Target Start/End: Original strand, 5764101 - 5764295
Alignment:
Q  22 ttttgtttgatgctgcagaggtagcatgttggatggtgacaggagaaagacaagctgcaaggattcgtggcttgtacttgaaaactatactaaagcaaga 121  Q
    |||||||  |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||| ||| ||||||| ||    
T  5764101 ttttgttccatgctgcagaggtatcatgttggatggtgacaggagaaagacaatctgcaaggattcgtagtttgtacttgaaaaccatattaaagcagga 5764200  T
Q  122 tatttcctactttgacactgaagcaaccagtggagaggttattggaagaatgtctggtgataccattctcattcaagatgccatgggagaaaagg 216  Q
    |||| | | ||||||||||||| ||| ||  ||||| || ||||| |||||||||||||| || |||||||||||||||||||||||||||||||    
T  5764201 tattgcattctttgacactgaaacaaacacaggagaagtaattggtagaatgtctggtgacacaattctcattcaagatgccatgggagaaaagg 5764295  T

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Target: chr2; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 31 - 216
Target Start/End: Complemental strand, 5833718 - 5833533
Alignment:
Q  31 atgctgcagaggtagcatgttggatggtgacaggagaaagacaagctgcaaggattcgtggcttgtacttgaaaactatactaaagcaagatatttccta 130  Q
    |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||| || | || |||||| | |     
T  5833718 atgctgcagaggtaacatgttggatggtaacaggagaaagacaagctgcaaggattcgtagcttgtacttgaaaaccatattacaacaggatattgcatt 5833619  T
Q  131 ctttgacactgaagcaaccagtggagaggttattggaagaatgtctggtgataccattctcattcaagatgccatgggagaaaagg 216  Q
    |||||| |||||| ||| ||  |||||||| ||||| |||||||||||||| || |||||||||||||| || |||||||||||||    
T  5833618 ctttgatactgaaacaaacacaggagaggtaattggtagaatgtctggtgacacaattctcattcaagaggctatgggagaaaagg 5833533  T

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Target: chr6 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 31 - 216
Target Start/End: Complemental strand, 29331421 - 29331236
Alignment:
Q  31 atgctgcagaggtagcatgttggatggtgacaggagaaagacaagctgcaaggattcgtggcttgtacttgaaaactatactaaagcaagatatttccta 130  Q
    |||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||| | |||||||||||||| ||| ||||||| |||||| | |     
T  29331421 atgctgcagaggtatcatgttggatggtgacaggagaaagacaatctgcgaggattcgtagtttgtacttgaaaaccatattaaagcaggatattgcatt 29331322  T
Q  131 ctttgacactgaagcaaccagtggagaggttattggaagaatgtctggtgataccattctcattcaagatgccatgggagaaaagg 216  Q
    ||||||||||||| ||| ||  |||||||| ||| | |||||||||||||| || |||||||||||||| || |||||||||||||    
T  29331321 ctttgacactgaaacaaacacaggagaggtaattagtagaatgtctggtgacacaattctcattcaagaagctatgggagaaaagg 29331236  T

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Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 48 - 208
Target Start/End: Complemental strand, 38527352 - 38527192
Alignment:
Q  48 tgttggatggtgacaggagaaagacaagctgcaaggattcgtggcttgtacttgaaaactatactaaagcaagatatttcctactttgacactgaagcaa 147  Q
    ||||||||||| ||||||||||||||||||||||| ||  | || ||||| |||||||| ||| |||  |||||| || | | |||||| |  ||| |||    
T  38527352 tgttggatggtaacaggagaaagacaagctgcaagaataagaggattgtatttgaaaacaatattaagacaagatgttactttctttgataaagaaacaa 38527253  T
Q  148 ccagtggagaggttattggaagaatgtctggtgataccattctcattcaagatgccatggg 208  Q
     ||  ||||| ||| | ||||||||||||||||||||  |||| |||||||||||||||||    
T  38527252 acacaggagaagttgtaggaagaatgtctggtgatactgttcttattcaagatgccatggg 38527192  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 48 - 208
Target Start/End: Complemental strand, 38568653 - 38568493
Alignment:
Q  48 tgttggatggtgacaggagaaagacaagctgcaaggattcgtggcttgtacttgaaaactatactaaagcaagatatttcctactttgacactgaagcaa 147  Q
    ||||||||||| ||||||||||||||||||||||| ||  | || ||||| |||||||| ||| |||  |||||| || | | |||||| |  ||| |||    
T  38568653 tgttggatggttacaggagaaagacaagctgcaagaataagaggattgtatttgaaaacaatattaagacaagatgttactttctttgataaagaaacaa 38568554  T
Q  148 ccagtggagaggttattggaagaatgtctggtgataccattctcattcaagatgccatggg 208  Q
     ||  ||||| ||||| || |||||||| ||||||||  |||| |||||||||||||||||    
T  38568553 acacaggagaagttatagggagaatgtcaggtgatactgttcttattcaagatgccatggg 38568493  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 35 - 216
Target Start/End: Complemental strand, 49738719 - 49738538
Alignment:
Q  35 tgcagaggtagcatgttggatggtgacaggagaaagacaagctgcaaggattcgtggcttgtacttgaaaactatactaaagcaagatatttcctacttt 134  Q
    ||||||||| |||||||||||||| || || || |||||||||||||| || || | ||| ||| | ||| | ||  ||| |||||||||   || ||||    
T  49738719 tgcagaggtggcatgttggatggtcaccggggagagacaagctgcaagaatacgggccttatacctcaaagcaattttaaggcaagatataagcttcttt 49738620  T
Q  135 gacactgaagcaaccagtggagaggttattggaagaatgtctggtgataccattctcattcaagatgccatgggagaaaagg 216  Q
    ||||  ||| ||| |||||  |||||| |||||||||| || ||||| ||  |||| |||||||||||||||||||| ||||    
T  49738619 gacagggaaacaaacagtgttgaggttgttggaagaatatcaggtgacacagttcttattcaagatgccatgggagagaagg 49738538  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 152 - 208
Target Start/End: Original strand, 51198046 - 51198102
Alignment:
Q  152 tggagaggttattggaagaatgtctggtgataccattctcattcaagatgccatggg 208  Q
    |||||||||| ||||||||||||||||||||||  |||| |||||||||||||||||    
T  51198046 tggagaggttgttggaagaatgtctggtgatactgttcttattcaagatgccatggg 51198102  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 216
Target Start/End: Original strand, 51211570 - 51211636
Alignment:
Q  150 agtggagaggttattggaagaatgtctggtgataccattctcattcaagatgccatgggagaaaagg 216  Q
    ||||| |||||| ||||||||||||| ||||||||  |||| |||||||| ||||||||||| ||||    
T  51211570 agtggtgaggttgttggaagaatgtcaggtgatacagttcttattcaagaagccatgggagacaagg 51211636  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 208
Target Start/End: Original strand, 51155531 - 51155587
Alignment:
Q  152 tggagaggttattggaagaatgtctggtgataccattctcattcaagatgccatggg 208  Q
    |||||||||| ||||||| ||||| ||||||||  |||| ||| |||||||||||||    
T  51155531 tggagaggttgttggaaggatgtcaggtgatacatttctaattaaagatgccatggg 51155587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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