View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21165_high_47 (Length: 296)

Name: NF21165_high_47
Description: NF21165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21165_high_47
NF21165_high_47
[»] chr3 (7 HSPs)
chr3 (19-169)||(10215411-10215568)
chr3 (241-287)||(10215640-10215686)
chr3 (29-97)||(45914027-45914095)
chr3 (30-97)||(49093862-49093929)
chr3 (42-97)||(3900683-3900738)
chr3 (29-73)||(16883274-16883318)
chr3 (113-169)||(49093790-49093846)
[»] chr5 (3 HSPs)
chr5 (36-169)||(34500665-34500798)
chr5 (244-287)||(34500873-34500916)
chr5 (30-96)||(21905840-21905906)
[»] chr6 (3 HSPs)
chr6 (28-95)||(4058993-4059060)
chr6 (125-169)||(11764296-11764340)
chr6 (29-97)||(20980156-20980224)
[»] chr2 (1 HSPs)
chr2 (30-97)||(19677721-19677788)
[»] chr7 (2 HSPs)
chr7 (30-95)||(11362005-11362070)
chr7 (125-169)||(21373648-21373692)
[»] chr4 (2 HSPs)
chr4 (28-96)||(9110353-9110421)
chr4 (36-96)||(17394649-17394709)
[»] chr1 (2 HSPs)
chr1 (30-88)||(9348618-9348676)
chr1 (37-73)||(34079294-34079330)


Alignment Details
Target: chr3 (Bit Score: 124; Significance: 8e-64; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 19 - 169
Target Start/End: Original strand, 10215411 - 10215568
Alignment:
Q  19 caaactatattcactaatacaaaaaacacttattagctcagagattttaaatgggatgttatccacctgacttaaaaactacaaccgaaagaatgatttt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  10215411 caaactatattcactaatacaaaaaacacttattagctcagagattttaaatgggatgttatccacctgacttaaaaactacaaccggaagaatgatttt 10215510  T
Q  119 aactgcaatacatattaaat-------gggttaaccccatttataaactattttatat 169  Q
    ||||||||||||||||||||       |||||||||||||||||||| ||||||||||    
T  10215511 aactgcaatacatattaaatgggttaagggttaaccccatttataaaatattttatat 10215568  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 241 - 287
Target Start/End: Original strand, 10215640 - 10215686
Alignment:
Q  241 aacccaaatttctcagtctgcctcttacaaactttccagatctgtgc 287  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||    
T  10215640 aacccaaatttctcagtctgcctctcacaaactttccagatctgtgc 10215686  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 29 - 97
Target Start/End: Complemental strand, 45914095 - 45914027
Alignment:
Q  29 tcactaatacaaaaaacacttattagctcagagattttaaatgggatgttatccacctgacttaaaaac 97  Q
    |||||| ||||||||||||||||||  ||||||||||||||||||  | ||||||||||| ||||||||    
T  45914095 tcactagtacaaaaaacacttattaaatcagagattttaaatgggtggctatccacctgatttaaaaac 45914027  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 97
Target Start/End: Complemental strand, 49093929 - 49093862
Alignment:
Q  30 cactaatacaaaaaacacttattagctcagagattttaaatgggatgttatccacctgacttaaaaac 97  Q
    ||||| ||||||||||||||||||  |||| |||||||| ||||  |||||||||| |||||||||||    
T  49093929 cactagtacaaaaaacacttattaagtcagggattttaagtgggcagttatccaccagacttaaaaac 49093862  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 3900738 - 3900683
Alignment:
Q  42 aaacacttattagctcagagattttaaatgggatgttatccacctgacttaaaaac 97  Q
    ||||||||||||||||| ||||||||| | ||  ||||||||| ||||||||||||    
T  3900738 aaacacttattagctcaaagattttaagtaggcagttatccacttgacttaaaaac 3900683  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 16883318 - 16883274
Alignment:
Q  29 tcactaatacaaaaaacacttattagctcagagattttaaatggg 73  Q
    |||||| |||||||||||||||||| ||||| |||||||| ||||    
T  16883318 tcactagtacaaaaaacacttattaactcagggattttaagtggg 16883274  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 169
Target Start/End: Complemental strand, 49093846 - 49093790
Alignment:
Q  113 gattttaactgcaatacatattaaatgggttaaccccatttataaactattttatat 169  Q
    |||||||||| || |||||| ||||||| ||||||||||||| || ||| |||||||    
T  49093846 gattttaacttcattacatactaaatggtttaaccccatttaaaatctaatttatat 49093790  T

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Target: chr5 (Bit Score: 118; Significance: 3e-60; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 36 - 169
Target Start/End: Original strand, 34500665 - 34500798
Alignment:
Q  36 tacaaaaaacacttattagctcagagattttaaatgggatgttatccacctgacttaaaaactacaaccgaaagaatgattttaactgcaatacatatta 135  Q
    |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  34500665 tacaaaaaacacttattagctcagagattttaaatgagatgctatccacctgacttaaaaactacaaccagaagaatgattttaactgcaatacatatta 34500764  T
Q  136 aatgggttaaccccatttataaactattttatat 169  Q
    ||||||||||||||||||||||||||||||||||    
T  34500765 aatgggttaaccccatttataaactattttatat 34500798  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 244 - 287
Target Start/End: Original strand, 34500873 - 34500916
Alignment:
Q  244 ccaaatttctcagtctgcctcttacaaactttccagatctgtgc 287  Q
    |||||||||||||||||||||| |||||||||| ||||||||||    
T  34500873 ccaaatttctcagtctgcctctcacaaactttctagatctgtgc 34500916  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 96
Target Start/End: Complemental strand, 21905906 - 21905840
Alignment:
Q  30 cactaatacaaaaaacacttattagctcagagattttaaatgggatgttatccacctgacttaaaaa 96  Q
    ||||| ||||||||||||||||||  ||   |||||||||||||||| ||||||| |||||||||||    
T  21905906 cactagtacaaaaaacacttattaaatctaggattttaaatgggatgctatccacatgacttaaaaa 21905840  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 95
Target Start/End: Original strand, 4058993 - 4059060
Alignment:
Q  28 ttcactaatacaaaaaacacttattagctcagagattttaaatgggatgttatccacctgacttaaaa 95  Q
    ||||||| ||||||||||||||||||  ||   ||||||||||||| |||||||||||||||||||||    
T  4058993 ttcactagtacaaaaaacacttattacatctaggattttaaatgggttgttatccacctgacttaaaa 4059060  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 169
Target Start/End: Original strand, 11764296 - 11764340
Alignment:
Q  125 aatacatattaaatgggttaaccccatttataaactattttatat 169  Q
    |||| ||||||||||| ||||||||||||| || |||||||||||    
T  11764296 aatagatattaaatggtttaaccccatttaaaatctattttatat 11764340  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 97
Target Start/End: Original strand, 20980156 - 20980224
Alignment:
Q  29 tcactaatacaaaaaacacttattagctcagagattttaaatgggatgttatccacctgacttaaaaac 97  Q
    |||||| ||||||||||||||||||| |||  ||||||| |||||  | ||||||| ||| ||||||||    
T  20980156 tcactagtacaaaaaacacttattaggtcaaggattttacatgggtaggtatccacttgatttaaaaac 20980224  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 97
Target Start/End: Complemental strand, 19677788 - 19677721
Alignment:
Q  30 cactaatacaaaaaacacttattagctcagagattttaaatgggatgttatccacctgacttaaaaac 97  Q
    ||||| ||||||||||||||||||  ||||||||||||||||||  | ||||||||||| ||||||||    
T  19677788 cactagtacaaaaaacacttattaaatcagagattttaaatgggtggctatccacctgatttaaaaac 19677721  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 95
Target Start/End: Original strand, 11362005 - 11362070
Alignment:
Q  30 cactaatacaaaaaacacttattagctcagagattttaaatgggatgttatccacctgacttaaaa 95  Q
    ||||| ||||||||||||||||||  ||   ||||||||||||| |||||||||||||||||||||    
T  11362005 cactagtacaaaaaacacttattacatctaggattttaaatgggttgttatccacctgacttaaaa 11362070  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 169
Target Start/End: Complemental strand, 21373692 - 21373648
Alignment:
Q  125 aatacatattaaatgggttaaccccatttataaactattttatat 169  Q
    |||| ||||||||||| ||||||||||||| || |||||||||||    
T  21373692 aatagatattaaatggtttaaccccatttaaaatctattttatat 21373648  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 96
Target Start/End: Complemental strand, 9110421 - 9110353
Alignment:
Q  28 ttcactaatacaaaaaacacttattagctcagagattttaaatgggatgttatccacctgacttaaaaa 96  Q
    ||||||| ||||||| ||||||||||  |||  ||||||||||||| || ||||||| |||||||||||    
T  9110421 ttcactagtacaaaatacacttattaaatcaaggattttaaatgggttgctatccacatgacttaaaaa 9110353  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 96
Target Start/End: Complemental strand, 17394709 - 17394649
Alignment:
Q  36 tacaaaaaacacttattagctcagagattttaaatgggatgttatccacctgacttaaaaa 96  Q
    ||||||||||||||||| || ||  |||||||| |||| || ||||||| |||||||||||    
T  17394709 tacaaaaaacacttattggcacaaggattttaagtgggttgatatccacatgacttaaaaa 17394649  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 88
Target Start/End: Complemental strand, 9348676 - 9348618
Alignment:
Q  30 cactaatacaaaaaacacttattagctcagagattttaaatgggatgttatccacctga 88  Q
    ||||| ||||||||||||||||||  ||||| ||||||||||||  | |||||||||||    
T  9348676 cactagtacaaaaaacacttattaaatcagatattttaaatgggtggctatccacctga 9348618  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 73
Target Start/End: Original strand, 34079294 - 34079330
Alignment:
Q  37 acaaaaaacacttattagctcagagattttaaatggg 73  Q
    |||||||||||||||||  ||||||||||||||||||    
T  34079294 acaaaaaacacttattaaatcagagattttaaatggg 34079330  T

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