View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21165_high_50 (Length: 269)
Name: NF21165_high_50
Description: NF21165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21165_high_50 |
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Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 23783003 - 23783250
Alignment:
| Q |
1 |
agagatcacacatgaggaaataagctgttcttaaaactagtccaacgtccaa-cccgttggactagctatttctaaagtaagggtcttacaataattttt |
99 |
Q |
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| T |
23783003 |
agagatcacacatgaggaaataagctgttcttaaaactagtccaacgtccaaacccgttggactagctatttctaaagtaagggtcttacaataattttt |
23783102 |
T |
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| Q |
100 |
caaatttaaattaagaacatacattatgaatattgaaatttagataaatctagatgacatacgtttcttctctgatgttgtttttatgttttgattttgc |
199 |
Q |
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| T |
23783103 |
caaatttaaattaaaaacatacattatgaataatgaaatttagataaatctagatgacatacgtttcttctctgatgttgtttttatgttttgattttgc |
23783202 |
T |
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| Q |
200 |
gtagaataacatgagcaccatgttgtggctgaacagaaagcaccacag |
247 |
Q |
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| T |
23783203 |
gtagaataacatgagcaccatgttgtggctgaacagaaagcaccacag |
23783250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 162 - 247
Target Start/End: Complemental strand, 23768917 - 23768832
Alignment:
| Q |
162 |
gtttcttctctgatgttgtttttatgttttgattttgcgtagaataacatgagcaccatgttgtggctgaacagaaagcaccacag |
247 |
Q |
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| T |
23768917 |
gtttcttctctgatgttgtttttatgttttgattttgcgtagaataacatgagcaccatgttgtggctgaacagtaagcaccacag |
23768832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 5 - 160
Target Start/End: Complemental strand, 23769107 - 23768951
Alignment:
| Q |
5 |
atcacacatgaggaaataagctgttcttaaaactagtccaacgtccaac--ccgttggactagctatttctaaagtaagggtcttacaataatttttcaa |
102 |
Q |
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| T |
23769107 |
atcacccataaggaaataatcagttcttaaaacaagtccaacggtcaaaagcccttgaactagctaattccaaagtactg-tcttaaaataattattcaa |
23769009 |
T |
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| Q |
103 |
atttaaattaagaacatacattatgaatattgaaatttagataaatctagatgacata |
160 |
Q |
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| T |
23769008 |
atttaaattaaaaacatacactatgaatattaaaattcagataaatctagatgacata |
23768951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 179 - 232
Target Start/End: Complemental strand, 30396032 - 30395979
Alignment:
| Q |
179 |
gtttttatgttttgattttgcgtagaataacatgagcaccatgttgtggctgaa |
232 |
Q |
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| T |
30396032 |
gtttttatgtttccactttgcgtataataatatgagcaccatattgtggctgaa |
30395979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 232
Target Start/End: Original strand, 8378819 - 8378879
Alignment:
| Q |
172 |
tgatgttgtttttatgttttgattttgcgtagaataacatgagcaccatgttgtggctgaa |
232 |
Q |
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| T |
8378819 |
tgatgctgcttttatgctttcactttgcgtagaataacatgagcacccttttctggctgaa |
8378879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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