View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21165_high_53 (Length: 255)
Name: NF21165_high_53
Description: NF21165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21165_high_53 |
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Alignment Details
Target: chr7 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 28 - 237
Target Start/End: Original strand, 3874077 - 3874283
Alignment:
| Q |
28 |
aatttgagctccgtttagtggtaaatgtaaatgtttgaattttaagatattcnnnnnnnnnnnnnngataaactaagatattctttattattgattatga |
127 |
Q |
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| T |
3874077 |
aatttgagctccgtttggtggtaaatgtaaatgtttgaattttaagatat---atatttttttttttataaactaagatattctttattattgactatga |
3874173 |
T |
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| Q |
128 |
tattatcctctcaccctaaaaaatttccatcaaaatnnnnnnntgtttgctttacacctcataacaggtatacattttgagagataaatagagtgatctt |
227 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
3874174 |
tattatcctctcaccctaaaaaatttccatcaaaataaaaaaatgtttgatttacacctcataacaggtatacatcttgagagataaatagagtgatctt |
3874273 |
T |
|
| Q |
228 |
ctagccatat |
237 |
Q |
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|||||||||| |
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| T |
3874274 |
ctagccatat |
3874283 |
T |
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