View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21165_high_60 (Length: 237)
Name: NF21165_high_60
Description: NF21165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21165_high_60 |
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| [»] scaffold0023 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 2626159 - 2626379
Alignment:
| Q |
1 |
cttttaatcttggcttaggaaactcactcactgctgagcttaatggagccatgataacaatataattggattctcaaaagggttggaatcacttatggat |
100 |
Q |
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||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2626159 |
cttttaatcttggcttaggaaactccctcactgctaagcttaatggagccatgataacaatataattggattctcaaaagggttggaatcacttatggat |
2626258 |
T |
|
| Q |
101 |
tgaaacaggctcaatgttagtcactttggctttcaagtctaaatccattgtgccttggcacttaaggaataggtgggataactgtttacatttactctcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2626259 |
tgaaacaggctcaatgttagtcactttggctttcaagtctaaatccattgtgccttggcacttaaggaataggtgggataactgtttacatttactctcc |
2626358 |
T |
|
| Q |
201 |
tcaatgtcttttattgtttct |
221 |
Q |
| |
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|||||| |||||||||||||| |
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| T |
2626359 |
tcaatgccttttattgtttct |
2626379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 217
Target Start/End: Complemental strand, 8295248 - 8295067
Alignment:
| Q |
36 |
gagcttaatggagccatgataacaatataattggattctcaaaagggttggaatcacttatggattgaaacaggctcaatgttagtcactttggctttca |
135 |
Q |
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|||||||||||||||||||| |||| |||| | |||||||||||| ||| ||||| | ||| | ||||||| || ||||| || ||| ||||||| |
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| T |
8295248 |
gagcttaatggagccatgatggcaattgaattcgcttctcaaaaggggtggcatcacctttggctagaaacagattctatgttggtaactgcagctttca |
8295149 |
T |
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| Q |
136 |
agtctaaatccattgtgccttggcacttaaggaataggtgggataactgtttacatttactctcctcaatgtcttttattgt |
217 |
Q |
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| T |
8295148 |
agtctatcacgatcgttccttggcacttaagaaatagatggcaaaattgttttcatctctgctcctctatgtctttttttgt |
8295067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 141
Target Start/End: Original strand, 27727547 - 27727656
Alignment:
| Q |
32 |
tgctgagcttaatggagccatgataacaatataattggattctcaaaagggttggaatcacttatggattgaaacaggctcaatgttagtcactttggct |
131 |
Q |
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|||||||||||||||||||||||| |||| |||| | |||||||||||| ||| ||||| | ||| | ||||||| || ||||| || ||| ||| |
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| T |
27727547 |
tgctgagcttaatggagccatgatggcaattgaattcgcttctcaaaaggggtggcatcacctttggctagaaacagattctatgttggtaactgcagct |
27727646 |
T |
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| Q |
132 |
ttcaagtcta |
141 |
Q |
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|||||||||| |
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| T |
27727647 |
ttcaagtcta |
27727656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 15907590 - 15907368
Alignment:
| Q |
1 |
cttttaatcttggcttaggaaactcactcactgctgagcttaatggagccatgataacaatataattggattctcaaaagggttggaatcacttatggat |
100 |
Q |
| |
|
|||||||||||||| |||| || |||||||||||| |||| |||||||| ||| || ||||| | ||| ||||||||| |||||||||||||||| ||| |
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| T |
15907590 |
cttttaatcttggcataggcaattcactcactgctaagctcaatggagctatggtagcaatagagatggcttctcaaaaaggttggaatcacttattgat |
15907491 |
T |
|
| Q |
101 |
tgaaacaggctcaatgttagtcactttggctttcaagtc-taaatccattgtgccttggcacttaaggaataggtgggataactgtttacatttactctc |
199 |
Q |
| |
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|||||||| |||||| |||| || ||||||| ||||| ||| ||||||| | |||| | |||||||||| |||||||| |||||||| ||| | || |
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| T |
15907490 |
tgaaacagattcaatgctagttacaatggcttttaagtcaaaaaaccattgttctttggaatctaaggaatagatgggataattgtttacacttagtttc |
15907391 |
T |
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| Q |
200 |
ctcaatgtcttttattgtttctt |
222 |
Q |
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||||| ||||| |||||||||| |
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| T |
15907390 |
ttcaatatctttcattgtttctt |
15907368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 81 - 214
Target Start/End: Original strand, 18285656 - 18285789
Alignment:
| Q |
81 |
ggttggaatcacttatggattgaaacaggctcaatgttagtcactttggctttcaagtctaaatccattgtgccttggcacttaaggaataggtgggata |
180 |
Q |
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||||||||||| || |||||||||||| || |||||||||||||| ||||| || || |||||||| ||||||||| ||||||| || | |||||| | |
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| T |
18285656 |
ggttggaatcaattgtggattgaaacaaattctatgttagtcactttagcttttaaatcaaaatccatagtgccttggaacttaagaaacaagtgggaaa |
18285755 |
T |
|
| Q |
181 |
actgtttacatttactctcctcaatgtcttttat |
214 |
Q |
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| ||||||||| | | ||||||||||||||||| |
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| T |
18285756 |
attgtttacatctgatttcctcaatgtcttttat |
18285789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0023 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0023
Description:
Target: scaffold0023; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 81 - 217
Target Start/End: Complemental strand, 138812 - 138676
Alignment:
| Q |
81 |
ggttggaatcacttatggattgaaacaggctcaatgttagtcactttggctttcaagtctaaatccattgtgccttggcacttaaggaataggtgggata |
180 |
Q |
| |
|
|||||||||||||||||| | ||||| | |||||||| || || |||||||| || |||| ||||| |||||||| ||||| || || ||||| | |
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| T |
138812 |
ggttggaatcacttatggctggaaactgattcaatgttggtgaccttggcttttaaatctatgaagattgttccttggcaattaagaaacagatgggaaa |
138713 |
T |
|
| Q |
181 |
actgtttacatttactctcctcaatgtcttttattgt |
217 |
Q |
| |
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|||||||||||||| | || |||||||||||| |||| |
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| T |
138712 |
actgtttacatttaatatcatcaatgtctttttttgt |
138676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 126 - 194
Target Start/End: Complemental strand, 27362289 - 27362221
Alignment:
| Q |
126 |
ttggctttcaagtctaaatccattgtgccttggcacttaaggaataggtgggataactgtttacattta |
194 |
Q |
| |
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|||||||||||||| ||||| |||||||||||||| | |||||||||||||| ||||| |||||||| |
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| T |
27362289 |
ttggctttcaagtcaaaatctattgtgccttggcaactgaggaataggtgggagaactgcatacattta |
27362221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 172
Target Start/End: Complemental strand, 22162418 - 22162282
Alignment:
| Q |
36 |
gagcttaatggagccatgataacaatataattggattctcaaaagggttggaatcacttatggattgaaacaggctcaatgttagtcactttggctttca |
135 |
Q |
| |
|
|||||||||||||||||||| |||| |||| | |||||||||||| ||| ||||| | ||| | ||||||| || ||||| || ||| ||||||| |
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| T |
22162418 |
gagcttaatggagccatgatggcaattgaattcgcttctcaaaaggggtggcatcacctttggctagaaacagattctatgttggtaactgcagctttca |
22162319 |
T |
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| Q |
136 |
agtctaaatccattgtgccttggcacttaaggaatag |
172 |
Q |
| |
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|||||| | || || |||||||||||||| ||||| |
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| T |
22162318 |
agtctatcacgatcgttccttggcacttaagaaatag |
22162282 |
T |
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