View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21165_high_64 (Length: 235)

Name: NF21165_high_64
Description: NF21165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21165_high_64
NF21165_high_64
[»] chr3 (11 HSPs)
chr3 (54-221)||(27995488-27995655)
chr3 (62-142)||(27905680-27905760)
chr3 (54-157)||(27949614-27949717)
chr3 (54-149)||(28044002-28044097)
chr3 (118-183)||(28500948-28501013)
chr3 (98-170)||(11405578-11405650)
chr3 (118-183)||(28475878-28475943)
chr3 (1-38)||(27995640-27995677)
chr3 (126-183)||(28076502-28076559)
chr3 (5-38)||(8540671-8540704)
chr3 (142-183)||(8542456-8542497)
[»] scaffold0067 (1 HSPs)
scaffold0067 (98-170)||(20749-20821)


Alignment Details
Target: chr3 (Bit Score: 131; Significance: 4e-68; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 54 - 221
Target Start/End: Complemental strand, 27995655 - 27995488
Alignment:
Q  54 aatccactgttatttcccatttgttaatgcttgaaattagataaccacatggttaaattgactacttatgatattttttaggattttgacttggaatcag 153  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||    
T  27995655 aatccactgttatttcccatttgttaatgcttgaaattagataaccacatgattaaattgactgcttatgatattttttaagattttgacttggaatcag 27995556  T
Q  154 gctttaaggtttaagcttcagtttgaaaagcnnnnnnnttcttatagataaactgtgtttgatcctat 221  Q
    |||| ||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||    
T  27995555 gcttcaaggtttaagcttcagtttgaaaagcaaaaaaattcttatagataaactgtgtttgatcctat 27995488  T

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Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 62 - 142
Target Start/End: Complemental strand, 27905760 - 27905680
Alignment:
Q  62 gttatttcccatttgttaatgcttgaaattagataaccacatggttaaattgactacttatgatattttttaggattttga 142  Q
    ||||||||||||||||||||||||||||||||||  |||| |||||||||||||| |||||||||||||| ||||||||||    
T  27905760 gttatttcccatttgttaatgcttgaaattagatggccacttggttaaattgactgcttatgatatttttgaggattttga 27905680  T

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Target: chr3; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 54 - 157
Target Start/End: Complemental strand, 27949717 - 27949614
Alignment:
Q  54 aatccactgttatttcccatttgttaatgcttgaaattagataaccacatggttaaattgactacttatgatattttttaggattttgacttggaatcag 153  Q
    |||||||||||||||||||||| |||||| |||||||||||  |||||  ||||||||| ||| ||||||||| |||| |||| |||||||||||| |||    
T  27949717 aatccactgttatttcccattttttaatgattgaaattagagcaccactaggttaaatttactgcttatgatacttttgaggaatttgacttggaaacag 27949618  T
Q  154 gctt 157  Q
    ||||    
T  27949617 gctt 27949614  T

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Target: chr3; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 54 - 149
Target Start/End: Complemental strand, 28044097 - 28044002
Alignment:
Q  54 aatccactgttatttcccatttgttaatgcttgaaattagataaccacatggttaaattgactacttatgatattttttaggattttgacttggaa 149  Q
    |||||||||| || |||| ||| |||||| |||||||||||  |||||||||||||||||||||||||| | |||||| |||||||||| ||||||    
T  28044097 aatccactgtgatatccctttttttaatgattgaaattagagcaccacatggttaaattgactacttataacatttttgaggattttgatttggaa 28044002  T

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Target: chr3; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 118 - 183
Target Start/End: Original strand, 28500948 - 28501013
Alignment:
Q  118 cttatgatattttttaggattttgacttggaatcaggctttaaggtttaagcttcagtttgaaaag 183  Q
    |||||||||||||| ||||||||| |||||||| |||||| |||||||||||||||||||||||||    
T  28500948 cttatgatatttttgaggattttgccttggaattaggcttcaaggtttaagcttcagtttgaaaag 28501013  T

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Target: chr3; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 98 - 170
Target Start/End: Complemental strand, 11405650 - 11405578
Alignment:
Q  98 ccacatggttaaattgactacttatgatattttttaggattttgacttggaatcaggctttaaggtttaagct 170  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||| || ||| ||||||||    
T  11405650 ccacatggttaaattgactgcttatgatatttttgaggattttgacttggaagcagggttcaagttttaagct 11405578  T

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Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 118 - 183
Target Start/End: Original strand, 28475878 - 28475943
Alignment:
Q  118 cttatgatattttttaggattttgacttggaatcaggctttaaggtttaagcttcagtttgaaaag 183  Q
    |||||||||||||| ||||||||| ||||||||||||||| ||| || ||||||| ||||||||||    
T  28475878 cttatgatatttttgaggattttgccttggaatcaggcttcaagattcaagcttctgtttgaaaag 28475943  T

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Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 27995677 - 27995640
Alignment:
Q  1 ttttgtaacttaagtcagtatcaatccactgttatttc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  27995677 ttttgtaacttaagtcagtatcaatccactgttatttc 27995640  T

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Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 183
Target Start/End: Complemental strand, 28076559 - 28076502
Alignment:
Q  126 attttttaggattttgacttggaatcaggctttaaggtttaagcttcagtttgaaaag 183  Q
    |||||| ||||||||||||||||| ||||||| | | ||||||||| |||||||||||    
T  28076559 atttttgaggattttgacttggaaacaggcttcaggttttaagctttagtttgaaaag 28076502  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 8540671 - 8540704
Alignment:
Q  5 gtaacttaagtcagtatcaatccactgttatttc 38  Q
    |||||||||||||||||||||| |||||||||||    
T  8540671 gtaacttaagtcagtatcaatctactgttatttc 8540704  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 183
Target Start/End: Original strand, 8542456 - 8542497
Alignment:
Q  142 acttggaatcaggctttaaggtttaagcttcagtttgaaaag 183  Q
    |||||||| ||||||| ||||||||||||| |||||||||||    
T  8542456 acttggaagcaggcttcaaggtttaagctttagtttgaaaag 8542497  T

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Target: scaffold0067 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 98 - 170
Target Start/End: Complemental strand, 20821 - 20749
Alignment:
Q  98 ccacatggttaaattgactacttatgatattttttaggattttgacttggaatcaggctttaaggtttaagct 170  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||| || ||| ||||||||    
T  20821 ccacatggttaaattgactgcttatgatatttttgaggattttgacttggaagcagggttcaagttttaagct 20749  T

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