View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21165_high_66 (Length: 225)
Name: NF21165_high_66
Description: NF21165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21165_high_66 |
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Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 4 - 208
Target Start/End: Complemental strand, 38874045 - 38873843
Alignment:
| Q |
4 |
gtgagaaggaacagcagaaaaaagaaccagtggtggtaaaaagagaagaacaagaaactcaactggcattagtggtacttaactcagattcaaaatataa |
103 |
Q |
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| T |
38874045 |
gtgagaaggaacagcagaaaaaagaaccagtggtggtaaaaagagaagaacaagaaactcaactggcattagtggtacttaactcagattcaaaaaataa |
38873946 |
T |
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| Q |
104 |
ggagagaattaatgtggttggtagttcgatcatcggcggttcaaccaagagaacccgccttttatattcccatcaaattcctcttgtgtattgtatggag |
203 |
Q |
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| T |
38873945 |
ggaga--attaatgtggttggtagttcgatcatcggcggttcaaccaagagaacccgccttttatattcccatcaaattcctcttgtgtattgtatggag |
38873848 |
T |
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| Q |
204 |
aaaat |
208 |
Q |
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||||| |
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| T |
38873847 |
aaaat |
38873843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 5 - 193
Target Start/End: Original strand, 38776728 - 38776917
Alignment:
| Q |
5 |
tgagaaggaacagcagaaaaaagaaccagtggtggtaaaaagagaagaacaagaaactcaactggcattagtggtacttaactcagattcaaaatataag |
104 |
Q |
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|||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||| |
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| T |
38776728 |
tgagaaggaacaacagaaaaaagaaccagtggtggtaaaaacagaagaacaggaaactcaactggcattagtggtacttaagtcagattcaaaaaataag |
38776827 |
T |
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| Q |
105 |
gagagaattaatgtggt---tggtagttcgatcatcggcggttcaaccaagagaacccgccttttatattcccatcaaattcctcttgtgta |
193 |
Q |
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| T |
38776828 |
--gagaattaacgtggttggtggtagttcgatcataggcggttcaaccaagagaacccgccttttatattcccattaaattcctcttgtgta |
38776917 |
T |
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