View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21165_high_7 (Length: 544)
Name: NF21165_high_7
Description: NF21165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21165_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 247 - 526
Target Start/End: Original strand, 43147245 - 43147524
Alignment:
| Q |
247 |
agttgagtgcattatgggagtgtttggcccagcttattgccgacattttctactccttaagagaagttgtgtcaaacaatttttgaagaaagcaaactag |
346 |
Q |
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| T |
43147245 |
agttgagtgcattatgggagtgtttggcccagcttattgccgacattttctactccttaagagaagttgtgtcaaacaatttttgaagaaagcaaactag |
43147344 |
T |
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| Q |
347 |
gcaaggttggcaaaatagatgaaacggcatcaaaatatcctatatgaatcaagttgaatgatacaccatatttaaatagtattacatgtatgcaggacaa |
446 |
Q |
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| T |
43147345 |
gcaaggttggcaaaatagatgaaacggcatcaaaatatcctatacgaatcaagttgaatgatacaccatatttaaatagtattacatgtatgcaggacaa |
43147444 |
T |
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| Q |
447 |
agaagtatgtaaaattctctcttaaagtgtgtaaaatattatgtaatgatacgatctagaactctctcttagaacctata |
526 |
Q |
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| T |
43147445 |
agaagtatgtaaaattctctcttaaagtgtgtaaaatattatgtaatgatacgatctagaactctctcttagaacctata |
43147524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 12 - 106
Target Start/End: Original strand, 43147010 - 43147104
Alignment:
| Q |
12 |
atgaatgaagttattataaaacaaatatagaaaagacgtataaaattacatagaagtcaactttactctgaactgtgttaccaaatttttgtgtt |
106 |
Q |
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| T |
43147010 |
atgaatgaagttattataaaacaaatatagaaaagacgtataaaattatatagaagtcaactttactctgaactgtgttaccaaatttttgtgtt |
43147104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 136; Significance: 1e-70; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 247 - 418
Target Start/End: Original strand, 39362723 - 39362893
Alignment:
| Q |
247 |
agttgagtgcattatgggagtgtttggcccagcttattgccgacattttctactccttaagagaagttgtgtcaaacaatttttgaagaaagcaaactag |
346 |
Q |
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| T |
39362723 |
agttgagtgcattatgggagtgtttggcccagcttattgctgac-ttttctagtccttaagagaagttgtgccatacaatttttgaagaaagcacagtag |
39362821 |
T |
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| Q |
347 |
gcaaggttggcaaaatagatgaaacggcatcaaaatatcctatatgaatcaagttgaatgatacaccatatt |
418 |
Q |
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| T |
39362822 |
gcaaggttggcaaaatagatgaaacggcatcaaaatatcctatatgaatcaagttgaatgatgcaccatatt |
39362893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 39362573 - 39362631
Alignment:
| Q |
14 |
gaatgaagttattataaaacaaatatagaaaagacgtataaaattacatagaagtcaac |
72 |
Q |
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|||||||||||| || ||||||||||||||||||||| ||||| || |||||||||||| |
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| T |
39362573 |
gaatgaagttatcatgaaacaaatatagaaaagacgtgtaaaactaaatagaagtcaac |
39362631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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