View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21165_high_9 (Length: 523)
Name: NF21165_high_9
Description: NF21165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21165_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 1 - 504
Target Start/End: Complemental strand, 13114727 - 13114235
Alignment:
| Q |
1 |
cgcaaaaccaaattaattaccactgggatggatatccctggctggtataaatatacatacaccaagaacaaacacaggtttttattgtcaacttgtaatt |
100 |
Q |
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| T |
13114727 |
cgcaaaaccaaattaattaccactgggatggatatccctggctggtataaatatacatacaccaagaacaaacacaggtttttattgtcaacttgtaatt |
13114628 |
T |
|
| Q |
101 |
tgaaaagctcttaaaatacagatacaccatatttatctatctactttaagaaaagttttcttataataacatgtgatacattttcgcatgtctttttcta |
200 |
Q |
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| T |
13114627 |
tgaaaagctcttaaaatacagatacaccatatttatctatctactttaagaaaagttttcttataataacatgtgatacattttcgcatgtctttttcta |
13114528 |
T |
|
| Q |
201 |
ccttgtgctgccctagattcgtgcaaagagcacgatatttttactatagcctataaaacaagtcgtcaacaacaaccaagttttatctaacaaaataaga |
300 |
Q |
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| T |
13114527 |
ccttgt-ctgccctagattcgtgcaaagagcacgatatttttactatagcctataaaataagtcgtcaacaacaaccaagttttatctaacaaaataaga |
13114429 |
T |
|
| Q |
301 |
ctggctatatatcgaacgacactaatgttttgtcataatactagtctataataaaagtgcttaaaatatatacaacatgcataatgaactatatttaagg |
400 |
Q |
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| T |
13114428 |
ctggctatgcatcgaacgacactaatgttttgtcataatactagtc----------gtgcttaaaatatatacaacatgcataataaactatatttaagg |
13114339 |
T |
|
| Q |
401 |
caacatcaattattcatgactaaagttttactcttccttttgagtgagctttcaagtcttcaaagtcgattgctcattcgccccgttcgagttgccgttg |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
13114338 |
caacatcaattattcatgactaaagttttactcttccttttgagtgagctttcaagtcttcaaagtcgattgttcattcgccccgttcgagttgccgttg |
13114239 |
T |
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