View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21165_low_11 (Length: 505)
Name: NF21165_low_11
Description: NF21165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21165_low_11 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 444; Significance: 0; HSPs: 23)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 1 - 489
Target Start/End: Original strand, 679587 - 680075
Alignment:
| Q |
1 |
gaaatgatcatatccaaagcttagtgatgtccatatgtgattctccaaaggaggaagtaacgtatactttctaatggaaggattccacaacaaataagaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
679587 |
gaaatgatcatatccaaagcttagtgatgtccatatgtgattctccaaaggagggagtaacttatactttctaacggaaggattccacaacaaataagaa |
679686 |
T |
|
| Q |
101 |
ccagcttttagcatgcagcaaaagatgccatcgcaagagcacattacgtccacaaagttacctcaaattgtaagaatattaggagggtaaagttgtgtat |
200 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
679687 |
ccagcttttagcattcagcaaaagatgccatcgcaagagcacattacgtccacaaagttacctcaaattgtaagaatattaggagggtaaagttgtgtat |
679786 |
T |
|
| Q |
201 |
gtgtaacaacggtagaagttgataaaatcgaggggattggagaatcatactcgactaactcagccaagttgttccaagaggttatcatgaggttgtggcg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
679787 |
gtgtaacaacggtagaagttgataaaatcgaggggattggagaatcatactcaactaactcagccaagttgttccaagaggttatcatgaggttgtggcg |
679886 |
T |
|
| Q |
301 |
cttagttgataattgaaggtgcttctttgcgaatgttggatcagcaataagagaatnnnnnnncttacagaggcatcgaagttggtaatttgatgggaaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
679887 |
cttagttgataattgaaggtgcttctttgcgaatgttggatcagcaataagagaataaaaaaacttacagaggcatcgaagttggtaatttgatgggaaa |
679986 |
T |
|
| Q |
401 |
cctaccgagaatctcagggaggacatcgaagagaagagtgggaagtggcggcggagatgttatggttccagccgtatggacgatgatgt |
489 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
679987 |
cctaccgagaatctcagggaggacatcgaagagaagagtgggaagtggtggcggagatgttatggttccagccgtatggacgatgatgt |
680075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 1 - 489
Target Start/End: Original strand, 747505 - 747998
Alignment:
| Q |
1 |
gaaatgatcatatccaaagcttagtgatgtccatatgtgattctccaaaggaggaagtaacgtatactttctaatggaaggattccacaacaaataagaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
747505 |
gaaatgatcatatccaaagcttagtgatgtccatatgtgattctccaaaggaggaagtaacgtatactttctaatggaaggattccacaacaaatatgaa |
747604 |
T |
|
| Q |
101 |
ccagcttttagcatgcagcaaaagatgccatcgcaagagcacattacgtccacaaagttacctcaaattgtaagaatattaggagggtaaagttgtgtat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
747605 |
ccagcttttagcatgcagcaaaagatgccatcgcaagatcacattacgtccacaaagttacctcgaattgtaagagtattaggagggtaaagttgtgtat |
747704 |
T |
|
| Q |
201 |
gtgtaacaacggtagaagttgataaaatcgaggggattggagaatcatactcgactaactcagccaagttgttccaagaggttatcatgaggttgtggcg |
300 |
Q |
| |
|
||||||||||| ||||||| ||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
747705 |
gtgtaacaacgatagaagtagataaaaccgaggggattggagaaacatactcaactaactcagccaagttgttccaagaggttatcatgaggtggtggcg |
747804 |
T |
|
| Q |
301 |
cttagttgataattgaaggtgcttctttgcgaatgttggatcagcaataagagaatnnnnnnncttacagaggcatcgaagttg-----gtaatttgatg |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
747805 |
cttagttgataattgaaggtgcttctttgcgaatgttggatcagcaataagagaataaaaaaacttacagaggcatcgaagttgtacgagtaatttgatg |
747904 |
T |
|
| Q |
396 |
ggaaacctaccgagaatctcagggaggacatcgaagagaagagtgggaagtggcggcggagatgttatggttccagccgtatggacgatgatgt |
489 |
Q |
| |
|
|||| ||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
747905 |
ggaagcctaccgagaaactcagggaaaacatcgaatggaagagtgggaagtggcggcggagatgttatggttccagccgtatggacgatgatgt |
747998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 44 - 356
Target Start/End: Original strand, 9595049 - 9595361
Alignment:
| Q |
44 |
tccaaaggaggaagtaacgtatactttctaatggaaggattccacaacaaataagaaccagcttttagcatgcagcaaaagatgccatcgcaagagcaca |
143 |
Q |
| |
|
||||||||||| | |||| || | |||||||||||||| |||||||| | ||||||||||| || || | || ||||| ||||||||||||||||||| |
|
|
| T |
9595049 |
tccaaaggaggcaataacttaaattttctaatggaagggttccacaaaacataagaaccaggcttgagaaaacaacaaaaaatgccatcgcaagagcaca |
9595148 |
T |
|
| Q |
144 |
ttacgtccacaaagttacctcaaattgtaagaatattaggagggtaaagttgtgtatgtgtaacaacggtagaagttgataaaatcgaggggattggaga |
243 |
Q |
| |
|
||||||||| | ||| || | |||| ||| |||||||||||||||||||||| |||||||||| ||||||||| || |||| ||| |||||||||| |
|
|
| T |
9595149 |
atacgtccacgtatttagatccatttgtgagagtattaggagggtaaagttgtgtctgtgtaacaatggtagaagtagaaaaaactgagtggattggaga |
9595248 |
T |
|
| Q |
244 |
atcatactcgactaactcagccaagttgttccaagaggttatcatgaggttgtggcgcttagttgataattgaaggtgcttctttgcgaatgttggatca |
343 |
Q |
| |
|
|||||| ||||| ||||||||||||||| ||||| ||||||||||| ||||||||| ||||| ||||||||||| |||||||| ||| |||||||| |
|
|
| T |
9595249 |
atcatatagaactaaatcagccaagttgttcatagaggctatcatgaggtggtggcgctttgttgacaattgaaggtgattctttgcaaattttggatca |
9595348 |
T |
|
| Q |
344 |
gcaataagagaat |
356 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
9595349 |
gaaataagagaat |
9595361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 44 - 445
Target Start/End: Complemental strand, 2491726 - 2491317
Alignment:
| Q |
44 |
tccaaaggaggaagtaacgtatactttctaatggaaggattccacaacaaataagaaccagcttttagcat---gcagcaaaagatgccatcgcaagagc |
140 |
Q |
| |
|
||||||||||| | |||| || |||||||||||||||| ||||||| ||| ||||| | | || |||| ||| |||||||||||||| ||| ||| |
|
|
| T |
2491726 |
tccaaaggaggcaataacttaaactttctaatggaagggttccacagaaaaaaagaaacgccattaagcaccacgcaacaaaagatgccatcacaatagc |
2491627 |
T |
|
| Q |
141 |
acattacgtccacaaagttacctcaaattgtaagaatattaggagggtaaagttgtgtatgtgtaacaacggtagaagttgataaaatcgaggggattgg |
240 |
Q |
| |
|
|| |||| || ||| ||| || | |||| ||| || |||||||||||||||| || ||||||| |||||||||||| || |||| |||||| ||||| |
|
|
| T |
2491626 |
accttaccaacataaatttatgtccatttgtgagattagtaggagggtaaagttgggtctgtgtaataacggtagaagtagaaaaaagcgagggtattgg |
2491527 |
T |
|
| Q |
241 |
agaatcatactcgactaactcagccaagttgttccaagaggttatcatgaggttgtggcgcttagttgataattgaaggtgcttctttgcgaatgttgga |
340 |
Q |
| |
|
||||||| | || |||||| |||||||||| ||||||| |||||||| ||||||||| ||||| |||||||| ||||| ||||||||| | ||| |
|
|
| T |
2491526 |
ggaatcatgatgaaccaactcacccaagttgttttttgaggttaccatgaggtggtggcgctttgttgacaattgaagatgcttttttgcgaatttagga |
2491427 |
T |
|
| Q |
341 |
tcagcaataagagaatnnnnnnncttacagaggcatcgaagttg-----gtaatttgatgggaaacctaccgagaatctcagggaggacatcgaagagaa |
435 |
Q |
| |
|
|||| ||| | ||||| |||||| ||||||||||| || ||||||| | |||| ||||| ||||||||||| |||||||| || ||| |
|
|
| T |
2491426 |
tcagaaattaaagaattgaaaaacttacaaaggcatcgaagctgtaccagtaatttcaccggaagcctacacagaatctcaggcaggacatcaaaaggaa |
2491327 |
T |
|
| Q |
436 |
gagtgggaag |
445 |
Q |
| |
|
|||| ||||| |
|
|
| T |
2491326 |
gagttggaag |
2491317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 2 - 246
Target Start/End: Original strand, 2659505 - 2659752
Alignment:
| Q |
2 |
aaatgatcatatccaaagcttagtgatgtccatatgtgattctccaaaggaggaagtaacgtatactttctaatggaaggattccacaacaaataagaac |
101 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||| |||||||| ||||||||| | |||| || |||||||||||||||| ||||| || |||||||||| |
|
|
| T |
2659505 |
aaatgatcatatccaaagcttagtaatgaccatttgtgattccgcaaaggaggcaataacttaaactttctaatggaagggttccataagaaataagaac |
2659604 |
T |
|
| Q |
102 |
cagcttttagcatgcagcaaaagatgccatcgcaagagc---acattacgtccacaaagttacctcaaattgtaagaatattaggagggtaaagttgtgt |
198 |
Q |
| |
|
|| || ||| | | ||||| |||||||||||||||| ||| | ||| | ||| | || | |||| ||| |||||||| |||||||||||| |
|
|
| T |
2659605 |
cattattgagcttaccacaaaatatgccatcgcaagagctcatcatcaggtcgatgcagtgatgtccatttgtgagagtattaggaatgtaaagttgtgt |
2659704 |
T |
|
| Q |
199 |
atgtgtaacaacggtagaagttgataaaatcgaggggattggagaatc |
246 |
Q |
| |
|
|||||||||||||||||||| || ||||| || |||||||||||||| |
|
|
| T |
2659705 |
ttgtgtaacaacggtagaagtagagaaaattgaagggattggagaatc |
2659752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 2501850 - 2501751
Alignment:
| Q |
1 |
gaaatgatcatatccaaagcttagtgatgtccatatgtgattctccaaaggaggaagtaacgtatactttctaatggaaggattccacaacaaataagaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||| || ||||| |||||||||| |||||||| ||||||||| |
|
|
| T |
2501850 |
gaaatgatcatatccaaagcttagtgatgtccattcgtgattctccaaaggaggcaataacttaaactttgtaatggaagggttccacaagaaataagaa |
2501751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 168 - 330
Target Start/End: Original strand, 9562507 - 9562672
Alignment:
| Q |
168 |
ttgtaagaatattaggagggtaaagttgtgtatgtgtaacaacggtagaagttgataaaatcgaggggattggagaatcatactcgactaactcagc--- |
264 |
Q |
| |
|
|||| ||||||||||||| |||||||||||| ||||||||| |||||||||| || |||| | |||||||||| |||||| || || |||||| | |
|
|
| T |
9562507 |
ttgtgagaatattaggagcgtaaagttgtgtctgtgtaacagcggtagaagtagaaaaaaccaaggggattgggaaatcatgctgaacaaactcaccacg |
9562606 |
T |
|
| Q |
265 |
caagttgttccaagaggttatcatgaggttgtggcgcttagttgataattgaaggtgcttctttgc |
330 |
Q |
| |
|
| | ||||||||||||||| || ||||| ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
9562607 |
cgaaatgttccaagaggttaccaagaggtggtggcgcttagttgacaattgaaggtgcttctttgc |
9562672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 44 - 446
Target Start/End: Complemental strand, 2474749 - 2474346
Alignment:
| Q |
44 |
tccaaaggaggaagtaacgtatactttctaatggaaggattccacaacaaataagaaccagcttttagcatgcagcaaaagatgccatcgcaagagcaca |
143 |
Q |
| |
|
||||||||||| | |||| || | |||| ||||||||| |||||||| |||||||| ||| |||| ||| ||| ||||||||||||||| |||||||||| |
|
|
| T |
2474749 |
tccaaaggaggcaataacttaaattttccaatggaagggttccacaa-aaataagagccatctttgagcgtgccgcaaaagatgccatcacaagagcaca |
2474651 |
T |
|
| Q |
144 |
ttacgtccacaaagttacctcaaattgtaagaatattaggagggtaaagttgtgtatgtgtaacaacggtagaagttgataaaatcgaggggattggaga |
243 |
Q |
| |
|
||| | ||||| || || | | | | |||||||||||||||||||||| ||| | || | |||| | || |||| |||||| ||||| || |
|
|
| T |
2474650 |
acacgaaggcgtagttatgtccaagtttgatactattaggagggtaaagttgtgtctgt---ataatgatagacttagaaaaaagcgagggtattgggga |
2474554 |
T |
|
| Q |
244 |
atcatactcgactaactcagccaagttgttccaagaggttatcatgaggttgtggcgcttagttgataattgaaggtgcttctttgcgaatgttggatca |
343 |
Q |
| |
|
|||||||| || ||||| | |||| ||| | ||| |||| |||||||| ||||||||| |||||||||||||||| |||||||||||| | |||| |
|
|
| T |
2474553 |
atcatactgaacgtactcacctaagtagttgctagatgttaccatgaggtggtggcgcttgtttgataattgaaggtgtttctttgcgaatctgggattg |
2474454 |
T |
|
| Q |
344 |
gcaataagagaatnnnnnnncttacagaggcatcgaagtt-----ggtaatttgatgggaaacctaccgagaatctcagggaggacatcgaagagaagag |
438 |
Q |
| |
|
| ||| | ||||| |||||||||||| ||||| | |||||||||| ||||| ||||| |||||||||||| |||| ||| ||| |||||| |
|
|
| T |
2474453 |
gaaattaaagaattaaagaacttacagaggcaccgaagctgtacaggtaatttgacgggaagcctacagagaatctcaggcaggagatcaaagggaagag |
2474354 |
T |
|
| Q |
439 |
tgggaagt |
446 |
Q |
| |
|
|||||||| |
|
|
| T |
2474353 |
tgggaagt |
2474346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 178 - 445
Target Start/End: Complemental strand, 2476159 - 2475887
Alignment:
| Q |
178 |
attaggagggtaaagttgtgtatgtgtaacaacggtagaagttgataaaatcgaggggattggagaatcatactcgactaactcagccaagttgttccaa |
277 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| ||||| || || | || |||||||| ||||||||| ||||||||| | |||| | | |
|
|
| T |
2476159 |
attaggagggtaaagttgtgtctgtgtaacaacggttgaagtagaaaatacggatgggattggcgaatcatacagaactaactcacgtgatatgttacga |
2476060 |
T |
|
| Q |
278 |
gaggttatcatgaggttgtggcgcttagttgataattgaaggtgcttctttgcgaatgttggatcagcaataagagaatnnnnnnncttacagaggcatc |
377 |
Q |
| |
|
| || |||||||| ||||||||| ||||| ||||||||||| |||||||||||| | ||||||| ||||||||||| |||||| ||||| | |
|
|
| T |
2476059 |
cattttcgcatgaggtggtggcgctttgttgacaattgaaggtgtttctttgcgaatttaggatcagaaataagagaattgaaaaacttacaaaggcacc |
2475960 |
T |
|
| Q |
378 |
gaagttg-----gtaatttgatgggaaacctaccgagaatctcagggaggacatcgaagagaagagtgggaag |
445 |
Q |
| |
|
|||| || ||||||||| || |||||| ||||||||||| |||||||| ||| ||||||||||||| |
|
|
| T |
2475959 |
gaagctgtacgagtaatttgacaggtaacctaaacagaatctcaggcaggacatcaaagggaagagtgggaag |
2475887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 119 - 231
Target Start/End: Original strand, 9566320 - 9566432
Alignment:
| Q |
119 |
caaaagatgccatcgcaagagcacattacgtccacaaagttacctcaaattgtaagaatattaggagggtaaagttgtgtatgtgtaacaacggtagaag |
218 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||| |||| | || |||| | | | |||| ||||||||||||||||| ||||||| ||| ||||||| |
|
|
| T |
9566320 |
caaaagatgccatcgcaagagcacgttaagtccacatagttgcgtctaattctgatactattgggagggtaaagttgtgtctgtgtaaaaaccgtagaag |
9566419 |
T |
|
| Q |
219 |
ttgataaaatcga |
231 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
9566420 |
tagataaaatcga |
9566432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 281 - 429
Target Start/End: Original strand, 755292 - 755445
Alignment:
| Q |
281 |
gttatcatgaggttgtggcgcttagttgataattgaaggtgcttctttgcgaatgttggatcagcaataagagaatnnnnnnncttacagaggcatcgaa |
380 |
Q |
| |
|
|||| |||||||| ||||||||| ||||| |||||||| || || ||||||||| ||||||||| ||||||||||| |||||||||||| || | |
|
|
| T |
755292 |
gttaacatgaggtggtggcgctttgttgacaattgaagatgtttttttgcgaattttggatcagaaataagagaattgaaagacttacagaggcaccgca |
755391 |
T |
|
| Q |
381 |
gttg-----gtaatttgatgggaaacctaccgagaatctcagggaggacatcga |
429 |
Q |
| |
|
| || ||||||||||||||| ||||| ||||||||||| |||||||||| |
|
|
| T |
755392 |
gctgtccgagtaatttgatgggaagcctacaaagaatctcaggcaggacatcga |
755445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 68 - 148
Target Start/End: Complemental strand, 2635294 - 2635214
Alignment:
| Q |
68 |
tttctaatggaaggattccacaacaaataagaaccagcttttagcatgcagcaaaagatgccatcgcaagagcacattacg |
148 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||||||| |||| | || |||||||||||||||||||||| ||||| |
|
|
| T |
2635294 |
tttctaatggaagggttccacagaaaataagaaccagctttgagcacaccgctaaagatgccatcgcaagagcacgttacg |
2635214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 281 - 445
Target Start/End: Original strand, 7334931 - 7335100
Alignment:
| Q |
281 |
gttatcatgaggttgtggcgcttagttgataattgaaggtgcttctttgcgaatgttggatcagcaataagagaatnnnnnnncttacagaggcatcgaa |
380 |
Q |
| |
|
|||| |||||||| ||||||||| ||||| |||||||||||||||||||||||| ||||||||| |||| ||||| ||||||||| ||||||| |
|
|
| T |
7334931 |
gttaccatgaggtggtggcgctttgttgacaattgaaggtgcttctttgcgaattttggatcagagataacagaattaaagaacttacagagacatcgaa |
7335030 |
T |
|
| Q |
381 |
gttg-----gtaatttgatgggaaacctaccgagaatctcagggaggacatcgaagagaagagtgggaag |
445 |
Q |
| |
|
| || ||||||| | |||| ||||| ||||||||||| |||||||| || ||||||| ||||| |
|
|
| T |
7335031 |
gctgtacgagtaatttcaccggaagcctacacagaatctcaggcaggacatcaaacggaagagtaggaag |
7335100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 281 - 445
Target Start/End: Original strand, 9566482 - 9566651
Alignment:
| Q |
281 |
gttatcatgaggttgtggcgcttagttgataattgaaggtgcttctttgcgaatgttggatcagcaataagagaatnnnnnnncttacagaggcatcgaa |
380 |
Q |
| |
|
|||| |||||||| |||||||| ||||| |||||||| || || ||||||||| ||||||||| ||||||||||| ||| |||||||| |||| |
|
|
| T |
9566482 |
gttaacatgaggtgatggcgctttgttgacaattgaagatgtttttttgcgaattttggatcagaaataagagaattgaaggacttgcagaggcaccgaa |
9566581 |
T |
|
| Q |
381 |
gttg-----gtaatttgatgggaaacctaccgagaatctcagggaggacatcgaagagaagagtgggaag |
445 |
Q |
| |
|
| || ||||||| ||||||| ||||| ||||||||||| | |||||||||| ||||||| ||||| |
|
|
| T |
9566582 |
gctgtccgagtaatttcatgggaagcctacaaagaatctcaggcaagacatcgaagggaagagtaggaag |
9566651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 2630843 - 2630771
Alignment:
| Q |
178 |
attaggagggtaaagttgtgtatgtgtaacaacggtagaagttgataaaatcgaggggattggagaatcatac |
250 |
Q |
| |
|
||||||||||||||||||||| |||| ||||| ||| ||||| || |||| ||| |||||||||||||||||| |
|
|
| T |
2630843 |
attaggagggtaaagttgtgtttgtgcaacaatggttgaagtagaaaaaagcgaagggattggagaatcatac |
2630771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 268 - 445
Target Start/End: Original strand, 7443641 - 7443823
Alignment:
| Q |
268 |
gttgttccaagaggttatcatgaggttgtggcgcttagttgataattgaaggtgcttctttgcgaatgttggatcagcaataagagaatnnnnnnnctta |
367 |
Q |
| |
|
|||||||| |||||||| ||||||| ||| |||| | ||| ||||||| ||||||||| ||||| | ||||||| ||| | ||||| |||| |
|
|
| T |
7443641 |
gttgttcctagaggttaccatgaggcggtgatgcttggctgaaaattgaaagtgcttcttggcgaaattgggatcagaaattaaagaattgaagaactta |
7443740 |
T |
|
| Q |
368 |
cagaggcatcgaagttg-----gtaatttgatgggaaacctaccgagaatctcagggaggacatcgaagagaagagtgggaag |
445 |
Q |
| |
|
|||||||| |||||||| ||||||| | |||| ||| | ||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
7443741 |
cagaggcaccgaagttgtatgagtaatttcacaggaagcctgcagagaatctcagggaggagatcgaagggaagagtgggaag |
7443823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 289 - 445
Target Start/End: Original strand, 7325065 - 7325226
Alignment:
| Q |
289 |
gaggttgtggcgcttagttgataattgaaggtgcttctttgcgaatgttggatcagcaataagagaatnnnnnnncttacagaggcatcgaagttg---- |
384 |
Q |
| |
|
||||| |||||||||||||||||||||||| || ||||||||||| || ||||||| ||| | ||||| |||||||||||| ||||| || |
|
|
| T |
7325065 |
gaggtggtggcgcttagttgataattgaagatgtttctttgcgaaagtgggatcagaaattaaagaattgaagaacttacagaggcaccgaagctgtatg |
7325164 |
T |
|
| Q |
385 |
-gtaatttgatgggaaacctaccgagaatctcagggaggacatcgaagagaagagtgggaag |
445 |
Q |
| |
|
||||||| | |||| ||| | |||||||||||| | ||||||||| ||||||| ||||| |
|
|
| T |
7325165 |
agtaatttcacaggaagcctgcagagaatctcaggtaagacatcgaaaggaagagttggaag |
7325226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 177 - 247
Target Start/End: Original strand, 755176 - 755246
Alignment:
| Q |
177 |
tattaggagggtaaagttgtgtatgtgtaacaacggtagaagttgataaaatcgaggggattggagaatca |
247 |
Q |
| |
|
|||| ||||||||||||||||| ||||||| ||| |||||||| || ||||| || |||||||| |||||| |
|
|
| T |
755176 |
tattgggagggtaaagttgtgtctgtgtaaaaacagtagaagtagaaaaaatggatgggattggggaatca |
755246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 423 - 467
Target Start/End: Complemental strand, 2634905 - 2634861
Alignment:
| Q |
423 |
acatcgaagagaagagtgggaagtggcggcggagatgttatggtt |
467 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2634905 |
acatcgaacggaagagtcggaagtggcggcggagatgttatggtt |
2634861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 38 - 100
Target Start/End: Complemental strand, 2630971 - 2630909
Alignment:
| Q |
38 |
tgattctccaaaggaggaagtaacgtatactttctaatggaaggattccacaacaaataagaa |
100 |
Q |
| |
|
||||| ||||| ||||| | |||| || |||||||||||||||| |||||||| ||||||||| |
|
|
| T |
2630971 |
tgattttccaatggaggcaataacttaaactttctaatggaagggttccacaagaaataagaa |
2630909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 180 - 250
Target Start/End: Original strand, 2644902 - 2644972
Alignment:
| Q |
180 |
taggagggtaaagttgtgtatgtgtaacaacggtagaagttgataaaatcgaggggattggagaatcatac |
250 |
Q |
| |
|
||||| ||||||||||||| |||||||||| ||||||||| || ||| || |||||||| ||||||||| |
|
|
| T |
2644902 |
taggaaggtaaagttgtgtttgtgtaacaatggtagaagtagaaaaaggtgaagggattggggaatcatac |
2644972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 71 - 141
Target Start/End: Original strand, 7324862 - 7324932
Alignment:
| Q |
71 |
ctaatggaaggattccacaacaaataagaaccagcttttagcatgcagcaaaagatgccatcgcaagagca |
141 |
Q |
| |
|
||||||||||| |||||||| ||||||||||| |||| ||||||| |||| |||||||| |||||||| |
|
|
| T |
7324862 |
ctaatggaagggttccacaaataataagaaccaactttgagcatgcccaaaaaaatgccatcacaagagca |
7324932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 44 - 100
Target Start/End: Original strand, 2644763 - 2644819
Alignment:
| Q |
44 |
tccaaaggaggaagtaacgtatactttctaatggaaggattccacaacaaataagaa |
100 |
Q |
| |
|
||||||||||| | |||| || ||||||||| |||||| |||||||| ||||||||| |
|
|
| T |
2644763 |
tccaaaggaggcaataacttaaactttctaacggaagggttccacaagaaataagaa |
2644819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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