View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21165_low_17 (Length: 450)
Name: NF21165_low_17
Description: NF21165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21165_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 45 - 439
Target Start/End: Complemental strand, 38319513 - 38319126
Alignment:
| Q |
45 |
catagttaatactaattgctaatacaccacacaaaaatgtgaccagccagctaccgcaaggccaaactcctgcagactttacctcgtttttagacattct |
144 |
Q |
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| T |
38319513 |
catagttaatactaattgctaatacaccacacaaaaatgtgaccagccagctcccaca--------ctacaggagactttacctcgtttttagatattct |
38319422 |
T |
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| Q |
145 |
cttggatttcaagaccaagaggttatgcagggttcgattaatcgaacctttaaaatgtagcttatgccaaaatcgtagtggtttaacatgattttattgt |
244 |
Q |
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| T |
38319421 |
cttggattccaagaccaagaagttatgcagcgttcgattaatagaaacttcataatgtagcttatgccaaaatcgtagtggtttaacatgattttattgt |
38319322 |
T |
|
| Q |
245 |
catttcaaacatgtcattaatctataaaatcgtccattttttaagtgataataacctactccatactttggatatataatacctaaccttcaattcataa |
344 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
38319321 |
catttcaaacatgtcattaatctataaaatcgaccattttttaagtgataataacctactccatactttggatat---atacctaaccttcaattcataa |
38319225 |
T |
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| Q |
345 |
tttagtggctaattaaaattgtac----nnnnnnnnnnnnnattgatgaaaacaacacacattcctcacaccaaaaagaatcaaagcatgcgcacctat |
439 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38319224 |
tttagtggctaattaaaattgtactttttattttattttttattgatgaaaacaacacacattcctcacaccaaaaagaatcaaagcatgcgcacctat |
38319126 |
T |
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