View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21165_low_2 (Length: 865)
Name: NF21165_low_2
Description: NF21165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21165_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 637 - 856
Target Start/End: Original strand, 49031685 - 49031904
Alignment:
| Q |
637 |
tagttgggaggaaagggagcaaacttggccgaaatggcaacaattggattatctgtgcctcctggactcactatatcaacagaagcatgtcaagaatatc |
736 |
Q |
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| T |
49031685 |
tagttgggaggaaagggagcgaacttagcagaaatggcaacaattggattatctgtccctcctggactcactatatcaacagaagcatgtcaagaatatc |
49031784 |
T |
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| Q |
737 |
aagaaaatgtaaagaacctaccaaatggtttgtgggaggagatacttgaaggccttaattttgtgcaaaatgaaatgggggcctttcttgggaatccttc |
836 |
Q |
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| T |
49031785 |
aagaaaatgtaaagaacctaccaaatggtttgtgggaggagatacttgaaggccttaattttgtgcaaaatgaaatgggggcctttcttgggaatccttc |
49031884 |
T |
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| Q |
837 |
aaaacctctcctcgtctctg |
856 |
Q |
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| T |
49031885 |
aaaacctctcctcgtctctg |
49031904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 380 - 474
Target Start/End: Original strand, 49031477 - 49031572
Alignment:
| Q |
380 |
cttctgtatttctgttttaa-cagagggtgttcacctttggcaaaggtagaagtgatggaaacaaatctatgaagtccttggtaagcattctttat |
474 |
Q |
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| T |
49031477 |
cttctttatttctgttttaaacagagggtgttcacttttggcaaaggtaaaagtgaaggaaacaaggccatgaagtccttggtaagtattctttat |
49031572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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