View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21165_low_20 (Length: 443)
Name: NF21165_low_20
Description: NF21165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21165_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 17 - 431
Target Start/End: Complemental strand, 34317089 - 34316681
Alignment:
| Q |
17 |
acacaaatcaaaatccctctaaactccaataaatcaacatccatcaaattagtgtttagggtttagagataacaaataagtgttcataatcttttagcat |
116 |
Q |
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| T |
34317089 |
acacaaatcaaaatccctctaaactccaacaaatcaacatccatcaaattagtgtttagggtttagagataacaaataagtgttcataatcttttagcat |
34316990 |
T |
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| Q |
117 |
acacattcttaacttaatttatatgttagttttttttatnnnnnnnnnnnngttgtt--tatattagtgtttagggtttagaatattgatgattagtagt |
214 |
Q |
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|||||||||| ||| ||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
34316989 |
gcacattcttagctt----tatatgttagtttttaaaa----aaaaaaaaagttgttcatatattagtgtttagggtttagaatattgatgattagtagt |
34316898 |
T |
|
| Q |
215 |
ttatgatcaaatacttgcatgttcaatatagatagatctattacgtacatcagcactgatatttccatattcgcatggcaaatcgagcttgaaggcatta |
314 |
Q |
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||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
34316897 |
ttatgatcaaatactcgcatgttcaatatagatagatctactacgtacatcagcactgatatttccatattcggatggcaaatcgagcttgaaggcatta |
34316798 |
T |
|
| Q |
315 |
tcgtcgatcttctcaagaacttgaaaaggttcatctcctcttgggttcagtttggattttctttgatttggaaaatgttcaatcctcatattagcttgct |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34316797 |
acgtcgatcttctcaagaacttgaaaaggttcatctcctcttgggttcagtttggattttctttgatttggaaaatgttcaatcctcatattagcttgct |
34316698 |
T |
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| Q |
415 |
ttgcataccattcattc |
431 |
Q |
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|||||||| |||||||| |
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| T |
34316697 |
ttgcatactattcattc |
34316681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 267 - 375
Target Start/End: Original strand, 16935110 - 16935218
Alignment:
| Q |
267 |
gcactgatatttccatattcgcatggcaaatcgagcttgaaggcattatcgtcgatcttctcaagaacttgaaaaggttcatctcctcttgggttcagtt |
366 |
Q |
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||||| ||||||||| | || | ||||||||| |||||| |||||||||||| ||||||||| |||| ||||||||| ||||||||||||||||||||| |
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| T |
16935110 |
gcactaatatttccacactcacttggcaaatccagcttgtaggcattatcgttgatcttctctagaatatgaaaaggtccatctcctcttgggttcagtt |
16935209 |
T |
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| Q |
367 |
tggattttc |
375 |
Q |
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||||||||| |
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| T |
16935210 |
tggattttc |
16935218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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