View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21165_low_21 (Length: 436)
Name: NF21165_low_21
Description: NF21165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21165_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 345; Significance: 0; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 419
Target Start/End: Original strand, 39839940 - 39840358
Alignment:
| Q |
1 |
ttcgtctattgagttttcgtgctcgaaggtcaccacctggtgagtgagtttaacatttatattgttctgttgttcgttcgttatgtttcattcactattc |
100 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39839940 |
ttcgtctattgagtcttcgtgctcgaaggtcaccacctggtgagtgagtttaacatttatattgttctgttgttcgttcgttatgtttcattcactattc |
39840039 |
T |
|
| Q |
101 |
tcaatgttgtttgttaatggaagatgataat---gtgttccgctgt---gaattgggggcttagggattttgagaaattcaacaaaccctaagccccaat |
194 |
Q |
| |
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||||| ||||||||||||||||||||||||| ||||||| |||| |||||| || |||||||||||||||||||| |||||||||||||||||||| |
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| T |
39840040 |
tcaatattgtttgttaatggaagatgataataatgtgttccactgtagagaattgtgg-cttagggattttgagaaattgaacaaaccctaagccccaat |
39840138 |
T |
|
| Q |
195 |
tcacacttatcttatcgttgtctaatttctataactatcataattgcttcttctttcttattctctctcagacgtacgtcaaaaaatgcccgctgctcct |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39840139 |
tcacacttatcttatcgttgtctaatttctataactatcataattggttcttctttcttattctctctcagacgtacgtcaaaaaatgcccgctgctcct |
39840238 |
T |
|
| Q |
295 |
ctgaaaccccgcagaataagctcccgcagaagaagcgcaactagtcaatatctgttaccaactggtgagtctgttcgttagttatgttatgttatgttga |
394 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
39840239 |
ctgaaaccccgcagaataagctcccgcagaagaagcgcaactagtcaatatctgttaccaactggtgagtctgttcgtta-----gttatgttatgttga |
39840333 |
T |
|
| Q |
395 |
ttcactattcattccttacacttca |
419 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
39840334 |
ttcactattcattccttacacttca |
39840358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 44798466 - 44798180
Alignment:
| Q |
1 |
ttcgtctattgagttttcgtgctcgaaggtcaccacc---tggtgagtgagtttaacatttatattgttctgttgttcgttcgttatgtttcattcacta |
97 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44798466 |
ttcgtctattgagtcttcgtgctcgaaggtcaccaccacctggtgagtgagtttaacatttatattgttctgttgttcgttcgttatgtttcattcacta |
44798367 |
T |
|
| Q |
98 |
ttctcaatgttgtttgttaatggaagatgataatgtgttccgctgtgaattgggggcttagggattttgagaaattcaacaaaccctaagccccaattca |
197 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
44798366 |
ttctcaatgttgtttgttaatggaagatgataatgtgttccgctgtgaattgggggcttagggattttgagaaattgaacaaaccctaagccccaattca |
44798267 |
T |
|
| Q |
198 |
cacttatc-tta--tcgttgtctaatttctataactatcataattgcttcttctttcttattctctctcagacgtacgtcaaaaaatgc |
283 |
Q |
| |
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|||||||| || | || | ||| | |||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
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| T |
44798266 |
cacttatcactaatttcttctttaaatatcataa--ttcataattgcttcttctttattattctctctcagacgtacatcaaaaaatgc |
44798180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 35161643 - 35161852
Alignment:
| Q |
1 |
ttcgtctattgagttttcgtgctcgaaggtcacc---acctggtgagtgagtttaacatttatattgttctgttgttcgttcgttatgtttcattcacta |
97 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35161643 |
ttcgtgtattgagtcttcgtgctcgaaggtcaccaccacctggtgagtgagtttaacatttatattgttctgttgttcgttcgttatgtttcattcacta |
35161742 |
T |
|
| Q |
98 |
ttctcaatgttgtttgttaatggaagatgataatgtgttccgct---gtgaattgggggcttagggattttgagaaattcaacaaaccctaagccccaat |
194 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| || | ||||| ||||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
35161743 |
ttctcaatgttgtttgttaatggaagatgataatgtgttccactttagagaatt-ggggcttagggattttgagtaattgaacaaaccctaagccccaat |
35161841 |
T |
|
| Q |
195 |
tcacacttatc |
205 |
Q |
| |
|
||||||||||| |
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|
| T |
35161842 |
tcacacttatc |
35161852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 216 - 315
Target Start/End: Original strand, 39845046 - 39845143
Alignment:
| Q |
216 |
ctaatttctataactatcataattgcttcttctttcttattctctctcagacgtacgtcaaaaaatgcccgctgctcctctgaaaccccgcagaataagc |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||| ||||||||||||||||||||||||| |||| |
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| T |
39845046 |
ctaatttctataactatcataattgcttcttctttcttat--tctttcagacgtacatcaaaaaatgcctgctgctcctctgaaaccccgcagaagaagc |
39845143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 232 - 283
Target Start/End: Complemental strand, 44631251 - 44631200
Alignment:
| Q |
232 |
tcataattgcttcttctttcttattctctctcagacgtacgtcaaaaaatgc |
283 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
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|
| T |
44631251 |
tcataattgcttcttctttattattctctctcagacgtacatcaaaaaatgc |
44631200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 114 - 173
Target Start/End: Original strand, 39844963 - 39845024
Alignment:
| Q |
114 |
ttaatggaagatgataatgtgttccgctgt---gaattgggggcttagggattttgagaaatt |
173 |
Q |
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||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||| |
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| T |
39844963 |
ttaatggaagatgataatgtgttccactgtagagaatt-ggggcttagggattttgagaaatt |
39845024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 39844886 - 39844923
Alignment:
| Q |
31 |
caccacctggtgagtgagtttaacatttatattgttct |
68 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||| |
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| T |
39844886 |
caccacctggtgagtgagtttaacatttatattattct |
39844923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 283
Target Start/End: Original strand, 35161887 - 35161925
Alignment:
| Q |
245 |
ttctttcttattctctctcagacgtacgtcaaaaaatgc |
283 |
Q |
| |
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|||||| ||||||||||||||||||| |||||||||||| |
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| T |
35161887 |
ttctttattattctctctcagacgtatgtcaaaaaatgc |
35161925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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