View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21165_low_23 (Length: 421)
Name: NF21165_low_23
Description: NF21165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21165_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 18 - 411
Target Start/End: Complemental strand, 49809848 - 49809455
Alignment:
| Q |
18 |
aaatgaattgaaactaagatgcagttagctactagttttaatgtttttaaattgaggttgtggttacacctgtgaacatttatattgtnnnnnnntgtag |
117 |
Q |
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| T |
49809848 |
aaatgaattgaaactaagatgcagttagctactagttttaatgtttttaaattgaggttgtggttacacctgtgaacatttatattgtaaaaaaatgtag |
49809749 |
T |
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| Q |
118 |
ctgataatgtcgaaattatggttgcaatgtcattgcaaagaccttaaaatcatttgcatttaagcacaggtgcggttgcagaccgtaatttaaaactatg |
217 |
Q |
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| T |
49809748 |
ctgataaagtcgaaattatggttgcaatgtcattgcaaagaccttaaaatcctttgcatttaagcacgagtgcggttgtagaccgtaatttaaaactatg |
49809649 |
T |
|
| Q |
218 |
attggatacacattagaaaacaattggggcgaattttattccatgattcgtgccaaaatagtagtacttatgaagcatacaacagaggagcctttagtaa |
317 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
49809648 |
attggatacacattagaaaacaattggggcgaattctattccatgattcgtgccaaaatagtagtacttatgaaacatacaacagaggagcctttagtaa |
49809549 |
T |
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| Q |
318 |
ctagtaactacatgcaatttcatgaagtaaaccgtctcatttattaatctaaaatcggatggctcatattacacaacaacaaaattaggttcat |
411 |
Q |
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| T |
49809548 |
ctagtaactacatgcaatttcatgaagtaaaccgtctcatttattaatctaaaatcggatggctcatattacacaacaacaaaattaggttcat |
49809455 |
T |
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