View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21165_low_24 (Length: 417)
Name: NF21165_low_24
Description: NF21165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21165_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 15 - 184
Target Start/End: Original strand, 21742684 - 21742853
Alignment:
| Q |
15 |
ggaatgtccaaatttaagattcattttcacgcaaaaatactcttcttttcttttgtcttatgcttaaacagaagtgaaaatagtacagatgacataaatg |
114 |
Q |
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| T |
21742684 |
ggaatgtccaaatttaagattcattttcacgcaaaaatactcttcttttcttttgtcttatgcttaaacagaagtgaaaatagtacagatgatataaatg |
21742783 |
T |
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| Q |
115 |
ttgaatatcttttgtacacacattcattattcttaaccaatacaaatccaatcatgtaatataccacacc |
184 |
Q |
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| T |
21742784 |
ttgaatatcttttgtatacacattcattattcttaaccaatacaaatccaatcatgtaatataccacacc |
21742853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 242 - 402
Target Start/End: Original strand, 21742911 - 21743071
Alignment:
| Q |
242 |
cacaccaacacattcaataattgattatattcatctccttatcgcagcagcaccatgaatagcagctatgtagaaaagctgtgtagctgtaagaataatc |
341 |
Q |
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| T |
21742911 |
cacaccaacacattcaataattgattatattcatctccttatcgcagcagcaccatgaatagcagctatgtagaaaagctgtgtagctgtaaggataatc |
21743010 |
T |
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| Q |
342 |
agaaaagcctccatagttttctgcaaaattgaataattcaaaactctctgttaagggaact |
402 |
Q |
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| T |
21743011 |
agaaaagcctccatagttttctgcaaaattgaataattcaaaactctttgttaagggaact |
21743071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 285 - 369
Target Start/End: Complemental strand, 24751794 - 24751710
Alignment:
| Q |
285 |
gcagcagcaccatgaatagcagctatgtagaaaagctgtgtagctgtaagaataatcagaaaagcctccatagttttctgcaaaa |
369 |
Q |
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| T |
24751794 |
gcagcagcaccatgaatagcaactatgtagagaagctgtgtgactgaaaggataattatgaaagcttccatggttttctgcaaaa |
24751710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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