View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21165_low_25 (Length: 404)
Name: NF21165_low_25
Description: NF21165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21165_low_25 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 331; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 11 - 385
Target Start/End: Complemental strand, 4142202 - 4141815
Alignment:
| Q |
11 |
cagagattaaagaaaacgtaatgttacctcataagcttcggatatctctttgaatttggcttcagcgtctttcttatttgagggattcttatcagggtgc |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4142202 |
cagagattaaagaaaacgtaatgttacctcataagcttcggatatctctttgaatttggcttcagcgtcttttttatttgagggattcttatcagggtgc |
4142103 |
T |
|
| Q |
111 |
catttcatggcaagttttctgtaagctttcttcaactcttcttctgtggcattcttgtcaaccttcaaaatcttgtagtagtctacccccatggttctct |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4142102 |
catttcatggcaagttttctgtaagctttcttcaactcttcttctgtggcattcttgtcaaccttcaaaatcttgtagtagtctacccccatggttctct |
4142003 |
T |
|
| Q |
211 |
tgcgttg------------aaattgtttacgatgcgatggtttcaatggttttatcagaattc-gtatcgatgatgattcaatgagtaatggggttaaca |
297 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
4142002 |
tgcgttgtgactttttgctgaattgtttacgatgcgatggtttcaatggttttatcagaattcggtatcgatgatgattcaatgagtaatggggttaaca |
4141903 |
T |
|
| Q |
298 |
gagagaataaaaaggagaaggatttttctggaaggtgtgtaatgaagtcgcaataccagaagagtgtagaactttcgaggcgtgtggg |
385 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4141902 |
gagagaataaaaaggagaaggatttttctggaaggtgtgtaatgaagtcgcaataccagaagagtgtagaactttcgaggcgtgtggg |
4141815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 35 - 193
Target Start/End: Complemental strand, 4145778 - 4145620
Alignment:
| Q |
35 |
tacctcataagcttcggatatctctttgaatttggcttcagcgtctttcttatttgagggattcttatcagggtgccatttcatggcaagttttctgtaa |
134 |
Q |
| |
|
||||||||| ||||| ||||| ||||||||| | ||||| || |||||||| |||||||| ||||||||||||||||||||||||||||| || |
|
|
| T |
4145778 |
tacctcatatgcttcagatatgagtttgaatttagtctcagcatcattcttattgtcaggattcttgtcagggtgccatttcatggcaagttttctatat |
4145679 |
T |
|
| Q |
135 |
gctttcttcaactcttcttctgtggcattcttgtcaaccttcaaaatcttgtagtagtc |
193 |
Q |
| |
|
||||||||||| || || |||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
4145678 |
gctttcttcaattcatcgtctgtggcattcttgtcaacctccaaaatctcatagtagtc |
4145620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 34 - 204
Target Start/End: Complemental strand, 38859351 - 38859181
Alignment:
| Q |
34 |
ttacctcataagcttcggatatctctttgaatttggcttcagcgtctttcttatt-tgagggattcttatcagggtgccatttcatggcaagttttctgt |
132 |
Q |
| |
|
|||| ||||||||||| || || | || |||||||||||||| ||||| || || | |||| ||||||||||| ||||| |||||||| |||||||||| |
|
|
| T |
38859351 |
ttacatcataagcttctgagatttgcttaaatttggcttcagcttcttttttgttattaggg-ttcttatcaggatgccacttcatggcgagttttctgt |
38859253 |
T |
|
| Q |
133 |
aagctttcttcaactcttcttctgtggcattcttgtcaaccttcaaaatcttgtagtagtctacccccatgg |
204 |
Q |
| |
|
||||||||||||| || || ||| |||| ||| ||||||| || || |||||||||||| || ||||||| |
|
|
| T |
38859252 |
aagctttcttcaagtcatcgtctttggcgttccgatcaacctgcagaagcttgtagtagtcaacacccatgg |
38859181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 35 - 202
Target Start/End: Complemental strand, 30479923 - 30479756
Alignment:
| Q |
35 |
tacctcataagcttcggatatctctttgaatttggcttcagcgtctttcttatttgagggattcttatcagggtgccatttcatggcaagttttctgtaa |
134 |
Q |
| |
|
||||||||||||||| || || | ||||| || |||||||| ||||| || || | ||||| ||||||||||||||||||||||||||||| || ||| |
|
|
| T |
30479923 |
tacctcataagcttcagaaatttgcttgaacttagcttcagcatcttttttgttggttggatttttatcagggtgccatttcatggcaagtttcctataa |
30479824 |
T |
|
| Q |
135 |
gctttcttcaactcttcttctgtggcattcttgtcaaccttcaaaatcttgtagtagtctacccccat |
202 |
Q |
| |
|
|||||||| | || || || |||||||||| ||||||| ||| || |||||||||||||| ||||| |
|
|
| T |
30479823 |
gctttcttgagttcatcgtcgttggcattcttatcaacctgcaagattttgtagtagtctacacccat |
30479756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 60 - 142
Target Start/End: Original strand, 4800362 - 4800444
Alignment:
| Q |
60 |
ttgaatttggcttcagcgtctttcttatt-tgagggattcttatcagggtgccatttcatggcaagttttctgtaagctttctt |
142 |
Q |
| |
|
||||||||||||||||| |||||||| || | |||| ||||||||||| ||||||||||| |||||||| | ||||||||||| |
|
|
| T |
4800362 |
ttgaatttggcttcagcatctttcttgttattaggg-ttcttatcaggatgccatttcatagcaagtttccgataagctttctt |
4800444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 31 - 190
Target Start/End: Original strand, 49917414 - 49917573
Alignment:
| Q |
31 |
atgttacctcataagcttcggatatctctttgaatttggcttcagcgtctttcttatt-tgagggattcttatcagggtgccatttcatggcaagttttc |
129 |
Q |
| |
|
|||||||| ||||||| || || |||| |||||| ||||||||| ||||| ||||| | |||| ||||| ||||||||||||||||| || | ||||| |
|
|
| T |
49917414 |
atgttaccgcataagcctcagagatctgtttgaaacgggcttcagcttcttttttattgttaggg-ttcttgtcagggtgccatttcatagccaattttc |
49917512 |
T |
|
| Q |
130 |
tgtaagctttcttcaactcttcttctgtggcattcttgtcaaccttcaaaatcttgtagta |
190 |
Q |
| |
|
| || ||||||||||| || |||||||| ||||| || || ||||||||||| || ||||| |
|
|
| T |
49917513 |
tatatgctttcttcaaatcatcttctgtagcatttttatccaccttcaaaatgttatagta |
49917573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University