View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21165_low_26 (Length: 395)
Name: NF21165_low_26
Description: NF21165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21165_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 378
Target Start/End: Complemental strand, 44953848 - 44953474
Alignment:
| Q |
1 |
aggaaaggtgagagtacttaaaaagttgaaaatttgaagtgatttgattgagtgattaatgaccacaagaatnnnnnnntgatgaggttatttattatta |
100 |
Q |
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| T |
44953848 |
aggaaacgtgagagtattaaaaaagttgaaaatttgaagtgatttgattgagtgattaatgaccacaagaataaaaaaatgatgaggttatttattatta |
44953749 |
T |
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| Q |
101 |
ttatggttgaattaaaaagtagaaacctacacagcgaaaatatggcgttacaaggattgagtactgtttctgtggcagttacaatatctgtaaggccttc |
200 |
Q |
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| T |
44953748 |
t---ggttgaattaaaaagtagaaacctccacagcgaaaatatggcgttacaaggattgagtactgtttctgtggcagttacaatatctgtaaggccttc |
44953652 |
T |
|
| Q |
201 |
gacttctaaacttgttcgaattccttcttcaagtttatgtcaggtcccttctccgagaatcagaattgggtcggtacggtgtaaagcggtgggagaaaac |
300 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44953651 |
gacttctaatcttgttcgaattccttcttcaagtttatgtcaggtcccttctccgagaatcagaattgggtcggtacggtgtaaagcggtgggagaaaac |
44953552 |
T |
|
| Q |
301 |
cagcagcaagtttataacggtgtttatggcccctggaccgttgaagccgaggatgtcaaagaggtaccaccttctcct |
378 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44953551 |
cagcagcaagtttataacggtgtttatggcccctggaccgttgaagccgaggatgtcaaagaggtaccaccttctcct |
44953474 |
T |
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