View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21165_low_28 (Length: 382)
Name: NF21165_low_28
Description: NF21165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21165_low_28 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 18 - 366
Target Start/End: Complemental strand, 36702546 - 36702200
Alignment:
| Q |
18 |
atgaacataactaaaaagaaacttacagtgaatcccttgcttgtaaatcctcatcaaacaaaactctaggaagtttgtccaagaattgcacggtcaaatc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36702546 |
atgaacataactaaaaagaaacttacagtgaatcccttgcttgtaaatcctcatcaaacaaaactctaggaagtttgtccaagaattgcacggtcaaatc |
36702447 |
T |
|
| Q |
118 |
caatcgacgaggctatagattattaacaagagacaactataagatgacttaattaatctatatatggtgcaaagaaataattaagcaagcaagaaagcta |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
36702446 |
caatcgacgaggctatagattattaacaagagacaactataagatgacttaattaatctatat--ggtgcaaagaaataattaagcaagcaagaaagcta |
36702349 |
T |
|
| Q |
218 |
acatgtaaatattttcactttggcatccaacctaacaatttcggcattaccagatgagctaggctttacggactccactttggtattattagaaactaaa |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36702348 |
acatgtaaatattttcactttggcatccaacttaacaatttcggcattaccagatgagctaggctttacggactccactttggtattattagaaactaaa |
36702249 |
T |
|
| Q |
318 |
taaaccaaatgaaaagtaatgaattgaatgaacttactgaggaagatga |
366 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36702248 |
taaaccaaatgaaaagtaatgaattgaatgaacttactgaggaagatga |
36702200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University