View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21165_low_29 (Length: 371)
Name: NF21165_low_29
Description: NF21165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21165_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 18 - 354
Target Start/End: Complemental strand, 37340845 - 37340511
Alignment:
| Q |
18 |
atatcattatttagccaattgtagttcacatttcacatacatagttggaccttccgctcactcgatgtgactcgggttcaaatccaaaaatctatagttg |
117 |
Q |
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| T |
37340845 |
atatcattatttagccaattgtagttcacatttcacatacatagttggaccttccgctcactcgatgtgactcgggttcaaatccaaaaatctatagttg |
37340746 |
T |
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| Q |
118 |
attggttatacgtaaattctattgtaaatcctcaatgagattgatcttcctctaataatgtgtgaattttcattcaatgagattgatgtaccaagggatt |
217 |
Q |
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| T |
37340745 |
a--ggttatacgtaaattctattgtaaatcctcaatgagattgatcttcctctaataatgtgtgaattttcattcaatgagattgatgtaccaagggatt |
37340648 |
T |
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| Q |
218 |
taaacaagccacaaatcagaaaccaattcatctatcaaataggtaactatgtcaaactcaagttctaagccattttcaaaggcttcaatgtcaaagtcaa |
317 |
Q |
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| T |
37340647 |
taaacaagccacaaatcagaaaccaattcatctatcaaataggtaactatgtcaagctcaagttctaagccattttcaaaggcttcaatgtcaaagtcaa |
37340548 |
T |
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| Q |
318 |
gccatctacccaatggagtgctcatgtccttgctaac |
354 |
Q |
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| T |
37340547 |
gccatctacccaatggagtgctcatgtccttgctaac |
37340511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 121 - 156
Target Start/End: Complemental strand, 3475660 - 3475625
Alignment:
| Q |
121 |
ggttatacgtaaattctattgtaaatcctcaatgag |
156 |
Q |
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| T |
3475660 |
ggttatacgtaaattctattataaatcctcaatgag |
3475625 |
T |
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