View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21165_low_3 (Length: 837)
Name: NF21165_low_3
Description: NF21165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21165_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 495; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 16 - 665
Target Start/End: Complemental strand, 53097932 - 53097273
Alignment:
| Q |
16 |
cagaatctcctaaaaaagatagcataaagaaatccaaagtgagtattactaaacctctttatta---tgatttaaaactttatcctttat---------- |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
53097932 |
cagaatctcctaaaaaagatagcataaagaaatccaaagtgagtattactaaacctctttattagtatgatttaaaactttatcctttattttccttttt |
53097833 |
T |
|
| Q |
103 |
---acnnnnnnnnaatttcatgtaattttgcttttgtagaaacaagttgtaccggggcccataacaaaagatgagcaagaggttgcagagacactctatg |
199 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53097832 |
attacttttttt-aatttcatgtaattttgcttttgtagaaacaagttgtaccggggcccataacaaaagatgagcaagaggttgcagagacactctatg |
53097734 |
T |
|
| Q |
200 |
ctttggctggaatgtttcctaccaattgtggtactaatgctgacaatgaagtataccgtgaatcgttaatgaagaattcggtttctcaggaacaagagga |
299 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
53097733 |
ctttggctggaatgtttcctaccagttgtggtactaatgctgacaatgaagtataccgtgaatcgttactgaagaattcggtttctca------agagga |
53097640 |
T |
|
| Q |
300 |
gagtactaatgctacttttcaaggttatttattcttt--atcacattgctttcattagttatttaattaataataataattactgttttatgaatttctg |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53097639 |
gagtactaatgctacttttcaaggttatttattctctctatcacattgctttcattagttatttaattaataataataattactgttttatgaatttctg |
53097540 |
T |
|
| Q |
398 |
attaannnnnnnnnatttgtcatgtgttttagcctcagaagctgttgaagatactaatcttattcctgaaagttcgtctatgggagcagcaaaaattagt |
497 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53097539 |
attaatttttttt-atttgtcatgtgttttagcctcagaagctgttgaagatactaatcttattcctgaaagttcgtctatgggagcagcaaaaattagt |
53097441 |
T |
|
| Q |
498 |
tcaagtgaaaccattgatgttgatgacaatgatttaactgggagtgcagataatttggtggcaactcaaagcactgctccaaaattaaatctgcagggtg |
597 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
53097440 |
tcaagtgaaaccattgatgttgatgacaatgatttaactgggagtgcagataatttggtggcaactcaaatcactgctccaaaagtaaatctgcagggtg |
53097341 |
T |
|
| Q |
598 |
tgcctatgatggttaagagtgaaaatggttgcaaagttgaagtgcatgactctgaattgtctattgaa |
665 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53097340 |
tgcctatgatggttaagagtgaaaatggttgcaaagttgaagtgcatgactctgaattgtctattgaa |
53097273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 167; E-Value: 5e-89
Query Start/End: Original strand, 663 - 837
Target Start/End: Original strand, 53096718 - 53096892
Alignment:
| Q |
663 |
gaatttggatgagcaggaatgaagggggtggaggaaattaggctacataacaaggtcaaaatgaagttgagtaaaagaaatttactgcaaacaagaagca |
762 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53096718 |
gaatttggatgagcagaaatgaagggggtggaggaaattaggctacataacaaggtcaaaatgaagttgagtaaaagaaatttactgcaaacaagaagca |
53096817 |
T |
|
| Q |
763 |
ttagttgcatgcgtcgagcctggcaataatgttagaccttctgttaaaacaaccaaagatgtctaggtattaacc |
837 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53096818 |
ttagttgcatacgtcgagcctggcaataatgttagaccttctgttaaaacaaccaaagatgtctaggtattaacc |
53096892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 219
Target Start/End: Original strand, 8021246 - 8021307
Alignment:
| Q |
158 |
ccataacaaaagatgagcaagaggttgcagagacactctatgctttggctggaatgtttcct |
219 |
Q |
| |
|
|||| |||||||||||| ||||||| || |||||||| ||||| ||||||| |||||||||| |
|
|
| T |
8021246 |
ccatcacaaaagatgaggaagaggtagctgagacactgtatgccttggctgcaatgtttcct |
8021307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University