View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21165_low_30 (Length: 370)
Name: NF21165_low_30
Description: NF21165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21165_low_30 |
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Alignment Details
Target: chr7 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 17 - 362
Target Start/End: Original strand, 36866553 - 36866898
Alignment:
| Q |
17 |
gttggtacccctggctatattgcacccggtaatttactattcattcatattactgttgaatttcatcaccctttaattgccaataatagtttgatttcta |
116 |
Q |
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| T |
36866553 |
gttggtacccctggctatattgcacccggtaatttactattcattcatattactgttgaatttcatcaccctttaattgcaaataatagtttgatttcta |
36866652 |
T |
|
| Q |
117 |
ggatgtggcaatgagtttgttttccaacacagatcagaggtataattgtgcaagatagtatttctctaacagttttgccttgtcatctgtgacagaaaat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36866653 |
ggatgtggcaatgagtttgttttccaacacagatcagaggtataattgtgcaagatagtatttctctaacagttttgccttgtcatctgtgacagaaaat |
36866752 |
T |
|
| Q |
217 |
gcttatgatatagtgcctggaagaaagtctgatgtatatagctatggagttgttttgctcgagctaataaccagaaagaaattattagtcccctctatga |
316 |
Q |
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| T |
36866753 |
gcttatgatatagtgcctggaagaaagtctgatgtatatagctatggagttgttttgctcgagctaataaccagaaagaaattattagtcccctctatga |
36866852 |
T |
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| Q |
317 |
atgatgaggcgaaggagacccacatagtgacctgggctagatctgt |
362 |
Q |
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| T |
36866853 |
atgatgaggcgaaggagacccacatagtgacctgggctagatctgt |
36866898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 133; Significance: 4e-69; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 17 - 360
Target Start/End: Original strand, 37837872 - 37838215
Alignment:
| Q |
17 |
gttggtacccctggctatattgcacccggtaatttactattcattcata-ttactgttgaatttcatcaccctttaattgccaataatagtttgatttct |
115 |
Q |
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| T |
37837872 |
gttggtacccctggctatattgcaccaggtaatttaccattcactcacaattaatgttgattctgacacccctttaatagccagtaatactttgatatct |
37837971 |
T |
|
| Q |
116 |
aggatgtggcaatgagtttgttttccaacacagatcagaggtataattgtgcaagatagtatttctctaacagttttgccttgtcatctgtgacagaaaa |
215 |
Q |
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| T |
37837972 |
aggatgtgatgacgagtttattttcaaacacaacttggaggtagagttgtgcaagatagtatt-ctctaacatgtttgcattgttttctgtgacagaaaa |
37838070 |
T |
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| Q |
216 |
tgcttatgatatagtgcctggaagaaagtctgatgtatatagctatggagttgttttgctcgagctaataaccagaaagaaattattagtcccctctatg |
315 |
Q |
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||| ||| | ||||||| |||||||||||||| |||||||| || |||||||||||||| ||||||||||||||||||||| ||||| | |||||| || |
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| T |
37838071 |
tgcatataaagtagtgccgggaagaaagtctgacgtatatagttacggagttgttttgcttgagctaataaccagaaagaaaatattacttccctctttg |
37838170 |
T |
|
| Q |
316 |
aatgatgaggcgaaggagacccacatagtgacctgggctagatct |
360 |
Q |
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||| |||| ||| |||||| ||||||||||||||||||||||||| |
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| T |
37838171 |
aataatgatgcggaggagatccacatagtgacctgggctagatct |
37838215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 165 - 362
Target Start/End: Original strand, 37851350 - 37851546
Alignment:
| Q |
165 |
tgcaagatagtatttctctaacagttttgccttgtcatctgtgacagaaaatgcttatgatatagtgcctggaagaaagtctgatgtatatagctatgga |
264 |
Q |
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||||||||||||||| ||||||| ||||| |||| |||||||||||| ||||| |||||| ||||||| ||||| |||||||||||||||||||| ||| |
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| T |
37851350 |
tgcaagatagtattt-tctaacatgtttgcattgttatctgtgacagagaatgcatatgatgtagtgccgggaaggaagtctgatgtatatagctacgga |
37851448 |
T |
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| Q |
265 |
gttgttttgctcgagctaataaccagaaagaaattattagtcccctctatgaatgatgaggcgaaggagacccacatagtgacctgggctagatctgt |
362 |
Q |
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||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||| ||||||| |||||||| || |||||||||||||| |
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| T |
37851449 |
gttgttttgctcgagataataaccagaaagaaattattagttccttctatgaatgatgaggcagaggagacgcacatagttacttgggctagatctgt |
37851546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 206 - 362
Target Start/End: Original strand, 37832538 - 37832694
Alignment:
| Q |
206 |
tgacagaaaatgcttatgatatagtgcctggaagaaagtctgatgtatatagctatggagttgttttgctcgagctaataaccagaaagaaattattagt |
305 |
Q |
| |
|
||||||| ||||| |||| || || || |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||| |
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| T |
37832538 |
tgacagagaatgcatatgttaatgttccaggaagaaagtctgatgtatatagctacggagttgttttgcttgagctaataaccagaaagaaattgttagt |
37832637 |
T |
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| Q |
306 |
cccctctatgaatgatgaggcgaaggagacccacatagtgacctgggctagatctgt |
362 |
Q |
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|||||| | || ||||| || ||||||||| | |||||| ||||||||||||||| |
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| T |
37832638 |
tccctctttaaacgatgaagcagaggagacccccttagtgatctgggctagatctgt |
37832694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 238 - 297
Target Start/End: Original strand, 37845552 - 37845611
Alignment:
| Q |
238 |
agaaagtctgatgtatatagctatggagttgttttgctcgagctaataaccagaaagaaa |
297 |
Q |
| |
|
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| T |
37845552 |
agaaagtctgatgtatacagctacggagttgttttgctcgagctaataaccagaaagaaa |
37845611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 162 - 296
Target Start/End: Original strand, 37843864 - 37843997
Alignment:
| Q |
162 |
ttgtgcaagatagtatttctctaacagttttgccttgtcatctgtgacagaaaatgcttatgatatagtgcctggaagaaagtctgatgtatatagctat |
261 |
Q |
| |
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|||||||||||||||||| ||||||| ||| | |||| | |||||||| ||||| |||| ||||||| | |||||||||||||||||||||||| |
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| T |
37843864 |
ttgtgcaagatagtattt-tctaacatgtttacattgtttcccgtgacagagaatgcatatgcaatagtgcaaagcagaaagtctgatgtatatagctat |
37843962 |
T |
|
| Q |
262 |
ggagttgttttgctcgagctaataaccagaaagaa |
296 |
Q |
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|||||| ||||||| ||| ||||||| |||||||| |
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| T |
37843963 |
ggagttattttgcttgagataataacaagaaagaa |
37843997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 296
Target Start/End: Original strand, 45562551 - 45562601
Alignment:
| Q |
246 |
tgatgtatatagctatggagttgttttgctcgagctaataaccagaaagaa |
296 |
Q |
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|||||| || ||||||||||| |||||||| ||||| |||||||||||||| |
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| T |
45562551 |
tgatgtgtacagctatggagtagttttgcttgagctgataaccagaaagaa |
45562601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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