View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21165_low_32 (Length: 367)
Name: NF21165_low_32
Description: NF21165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21165_low_32 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 74 - 367
Target Start/End: Complemental strand, 5821547 - 5821254
Alignment:
| Q |
74 |
aatttaggtatatttctaacacttagcgacaaattaaaataaagtgacattttgtcatctctttaatattgcgattcatctttttagtagttgacacttg |
173 |
Q |
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| T |
5821547 |
aatttaggtatatttctaacacttagcgacaaattaaaataaagtgacattttgtcatctctttaatattgcgattcatctttttagtagttgacacttg |
5821448 |
T |
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| Q |
174 |
ataccattgtttcaaaaaattgaaactgagatgttttaagttcaactactttaaactgtttgaacaaggatcaaattgtagatataatgaaccgtctagt |
273 |
Q |
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| T |
5821447 |
ataccattgtttcaaaaaattgaaactgagatgttttaagttcaactactttaaaccgtttgaacaaggatcaaattgtagatataatgaaccgtctagt |
5821348 |
T |
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| Q |
274 |
taggttcggtttttaaaaacattggttgatagtgccattggaataataaaatatcatagatgtaaatcctttgacgaaaatgatacatgaatgc |
367 |
Q |
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| T |
5821347 |
taggttcggtttttaaaaacattggttgatagtgccattggaataataaaatatcatagatgtaaatccttagacgaacatgatacatgcatgc |
5821254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 257 - 330
Target Start/End: Complemental strand, 5819639 - 5819567
Alignment:
| Q |
257 |
ataatgaaccgtctagttaggttcggtttttaaaaacattggttgatagtgccattggaataataaaatatcat |
330 |
Q |
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| T |
5819639 |
ataatgaaccatctagttaggt-cggtttttaaaaacactagttgatagtaacattggaataataaaacatcat |
5819567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 90
Target Start/End: Complemental strand, 5821593 - 5821563
Alignment:
| Q |
60 |
ttacattgttttctaatttaggtatatttct |
90 |
Q |
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| T |
5821593 |
ttacattgttttctaatttaggtatatttct |
5821563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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