View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21165_low_34 (Length: 359)
Name: NF21165_low_34
Description: NF21165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21165_low_34 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 6 - 359
Target Start/End: Original strand, 42527302 - 42527655
Alignment:
| Q |
6 |
tgagaagaaacacagcaagagaagtattatgaagaatgaaagtagttacacaactatttatagctagctgagcctgtacaataccatacaataggtaggc |
105 |
Q |
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| T |
42527302 |
tgagaagaaacacagcaagagaagtattatgaagaatgaaagtagttacacaactatttatagctagctgagcctgtacaataccatacaataggtaggc |
42527401 |
T |
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| Q |
106 |
aacatcatataagaagaaaatagaagctacactatgttgttacttggagtctaaggtatatatcctctatactattatcatgtaatgtaataagaagtac |
205 |
Q |
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| T |
42527402 |
aacatcatataagaagaaaatagaagctacactatgttgttacttggagtctaaggtatatatcctctatactattatcatgtaatgtaataagaagtac |
42527501 |
T |
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| Q |
206 |
tatattttagttagctaattatgggtggcgtcaatattaagcttcctatattgtagcaatatgtgtcattatgttatggaacattacaatatatagtacg |
305 |
Q |
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| T |
42527502 |
tatattttagttagctaattatgggtggcgtcaatattaaccttcctatattatagcaatatgtgtcattatgttatggaacattacaatatatagtacg |
42527601 |
T |
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| Q |
306 |
catgattgttcactaactatagaaaatattaataaaatgctaacttggagttac |
359 |
Q |
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| T |
42527602 |
catgattgttccctaaatatagaaaatattaataaaatgctaacttggagttac |
42527655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 198 - 350
Target Start/End: Original strand, 42519232 - 42519384
Alignment:
| Q |
198 |
agaagtactatattttagttagctaattatgggtggcgtcaatattaagcttcctatattgtagcaatatgtgtcattatgttatggaacattacaatat |
297 |
Q |
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| T |
42519232 |
agaagtattatctttttgttagctaattatgggtggagtcaatattaaccttcatagattacaacaacacatgtcattatgttatggttcattacaaaat |
42519331 |
T |
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| Q |
298 |
atagtacgcatgattgttcactaactatagaaaatattaataaaatgctaact |
350 |
Q |
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| T |
42519332 |
gtagtacgcgtgattattcactaaatatagaaattattaacaaactgctaact |
42519384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 46 - 191
Target Start/End: Original strand, 1079727 - 1079865
Alignment:
| Q |
46 |
agtagttacacaactatttatagctagctgagcctgtacaataccatacaataggtaggcaacatcatataagaagaaaatagaagctacactatgttgt |
145 |
Q |
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| T |
1079727 |
agtagttacacaattattcatagctagctgagcctgtacattagcttacaataggtaggcaacatcatataagaagtaaagataagttatacta---tgt |
1079823 |
T |
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| Q |
146 |
tacttggagtctaaggtatatatcctctatactattatcatgtaat |
191 |
Q |
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| T |
1079824 |
tacttggagtctaag----ctatcttctatactagtatcatgtaat |
1079865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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