View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21165_low_39 (Length: 329)
Name: NF21165_low_39
Description: NF21165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21165_low_39 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 35630313 - 35630627
Alignment:
| Q |
1 |
tctatcctctcaaaattaaagatggatgttannnnnnnatgccaaaactgtgatccaatttataagtcatttcaaggcaaatgatattgagagtttctat |
100 |
Q |
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| T |
35630313 |
tctatcctctcaaaattaaagatggatgttatttttttatgccaaaactgtgatccaatttataagtcatttcaaggcaaatgatattgagagtttctat |
35630412 |
T |
|
| Q |
101 |
ttaaacatactttaattgatttatcttgatatgtatggtaagaagtagcgaataatcgatgataaactgacagaggatgagctgagagctatattatcaa |
200 |
Q |
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| T |
35630413 |
ttcaacatactttaattgatttatcttgatatgtatggtaagaagtagcagataatcgatgataaactgataaagaatgagctgagaactatattatcaa |
35630512 |
T |
|
| Q |
201 |
attgaatttgtaatatttaaaatnnnnnnnnttgtgtttaaatcgacggataaatatgtaattacataagaatatatttttgattcatattcaattatcg |
300 |
Q |
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||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
35630513 |
attgaatttgtaatattaaaaa---aaaaaattgtgtttgaatcgacggataaatatgtaattacataagaatatattcttgattcatattcaattatcg |
35630609 |
T |
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| Q |
301 |
tttttgtttatatttcat |
318 |
Q |
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||||| |||||||||||| |
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| T |
35630610 |
tttttatttatatttcat |
35630627 |
T |
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