View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21165_low_40 (Length: 326)
Name: NF21165_low_40
Description: NF21165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21165_low_40 |
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Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 36947121 - 36946815
Alignment:
| Q |
1 |
atatccatgttagaagcaaaaggtattattgacattgattattctctatctttacttcattttgcagctgaagttagctcaataccaattgtggatgatt |
100 |
Q |
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| T |
36947121 |
atatccatgttagaagcaaaaggtattattgacattgaatattctctatctttacttcattttgcagctgaagttagctcaataccaattgtggatgatt |
36947022 |
T |
|
| Q |
101 |
ctggttcattatatgatgtatattcaagaaggtagaaactcttttttcttccttgtgctaagaacagctagacattttggaagcttatttatgtattgct |
200 |
Q |
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| T |
36947021 |
ctggttcattatatgatgtatattcaagaaggtagaaactctttt--cttccttgtgctaagaacagctagacattttggaagcttatttatgtattgct |
36946924 |
T |
|
| Q |
201 |
attttcttcacagtgatcttactgcattggctagatgtgaaatgtatgctaggataagcctggatagttttaatatctctgaggtaatttctcttttcct |
300 |
Q |
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| T |
36946923 |
attttcttcacagtgatcttactgcattggctagatgtgaaatgtatgctaggataagcctggatagttttaatatctctgaggtaatttctcttttcct |
36946824 |
T |
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| Q |
301 |
ctctatatg |
309 |
Q |
| |
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||||||||| |
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| T |
36946823 |
ctctatatg |
36946815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 135
Target Start/End: Original strand, 46667663 - 46667737
Alignment:
| Q |
61 |
tttgcagctgaagttagctcaataccaattgtggatgattctggttcattatatgatgtatattcaagaaggtag |
135 |
Q |
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| T |
46667663 |
tttgcagctaaagttagctcaataccaattgtggatgaaaatgattcattgcttgacatatattcaagaaggtag |
46667737 |
T |
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