View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21165_low_41 (Length: 326)
Name: NF21165_low_41
Description: NF21165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21165_low_41 |
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Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 11 - 310
Target Start/End: Original strand, 51514681 - 51514980
Alignment:
| Q |
11 |
aagaatataagaagagttgtcctgtcgtcagaaccggttagtaacatcacatcccnnnnnnncagatttcatcttcattttgtgttagtcttagtatgtt |
110 |
Q |
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| T |
51514681 |
aagaatgtaagaagagttgtcctgtcgtcagaaccggttagtaacatcacatccctttttttcagatttcatcttcattttgtgttagtcttagtatgtt |
51514780 |
T |
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| Q |
111 |
aattaatcaatcaatcgacaaaccatcattttaatttaannnnnnnataggaagattatgtgttgaggttacctctgcttcgaaaattgcttacatatct |
210 |
Q |
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| T |
51514781 |
aattaatcaatcaatcgacaaaccatcattttaatttaattttattataggaagattatgtgttgaggttacctctgcttcgaaaattgcttacatatct |
51514880 |
T |
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| Q |
211 |
gaggaattgtgcattggatgtggtatctgtgttaaggtattattcacttttttaatgatgctcgctttgtgtatctgttcatatctttgagtgttaattt |
310 |
Q |
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| T |
51514881 |
gaggaattgtgcattggatgtggtatctgtgttaaggtattattcacttttttaatgatgctcgctttgtgtgtctgttcatatctttgagtgttaattt |
51514980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 160 - 254
Target Start/End: Original strand, 7999736 - 7999830
Alignment:
| Q |
160 |
ggaagattatgtgttgaggttacctctgcttcgaaaattgcttacatatctgaggaattgtgcattggatgtggtatctgtgttaaggtattatt |
254 |
Q |
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| T |
7999736 |
ggaaaattatgtgttgaggttacttctgcgtccaagattgcttacatttccgaggaattgtgcattggatgcggtatttgtgttaaggtattatt |
7999830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 168 - 254
Target Start/End: Complemental strand, 7908832 - 7908746
Alignment:
| Q |
168 |
atgtgttgaggttacctctgcttcgaaaattgcttacatatctgaggaattgtgcattggatgtggtatctgtgttaaggtattatt |
254 |
Q |
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| T |
7908832 |
atgtgttgaggttactcctgagtccaagattgcttacatatctgaggaattgtgcattggatgccgtatgtgtgttaaggtattatt |
7908746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 157 - 251
Target Start/End: Complemental strand, 1304677 - 1304583
Alignment:
| Q |
157 |
ataggaagattatgtgttgaggttacctctgcttcgaaaattgcttacatatctgaggaattgtgcattggatgtggtatctgtgttaaggtatt |
251 |
Q |
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| T |
1304677 |
ataggaaaattgtgtattgaggttaattctgcatcgaagattgcttacctatccgaggaattgtgcaatggatgtggtatttgtgttaaggtatt |
1304583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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