View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21165_low_42 (Length: 321)
Name: NF21165_low_42
Description: NF21165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21165_low_42 |
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Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 19 - 311
Target Start/End: Complemental strand, 29234047 - 29233746
Alignment:
| Q |
19 |
tgtgaattaagattgatgacattgttgttgttcttgtacacttacatgaatgt---------taggcaagccttttgttgatgtcttgaacgaagctggt |
109 |
Q |
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| T |
29234047 |
tgtgaattaagattgatgacattgttgttgttcttgtacacttacatgaatgtatttttttttaggcaagccttttgttgatgtcttgaacgaagctggt |
29233948 |
T |
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| Q |
110 |
gtgctttctggtatcaaggttgacaagggtaccattgagcttgccggaactgatggagaaaccaccactcagggtcttgatggacttggtgcttgttgtg |
209 |
Q |
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|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
29233947 |
gtgcttcctggtatcaaggttgacaagggtaccgttgagcttgccggaactgatggagaaaccaccactcagggtcttgatggacttggtgctcgttgtg |
29233848 |
T |
|
| Q |
210 |
ctaagtactatgaagctggtgcacgtttcgctaaatggcgtgcagtgcttaaaattggccccaatgagccatctgagcactctatccacgagaatgccta |
309 |
Q |
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| T |
29233847 |
ctaagtactatgaagctggtgcacgtttcgctaaatggcgtgcagtgcttaaaatcggccccaatgagccatctgagcactctatccacgagaatgccta |
29233748 |
T |
|
| Q |
310 |
tg |
311 |
Q |
| |
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|| |
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| T |
29233747 |
tg |
29233746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 19 - 311
Target Start/End: Complemental strand, 29237800 - 29237496
Alignment:
| Q |
19 |
tgtgaattaagattgatgacattgttgttgttcttgtacacttacatgaatgt------------taggcaagccttttgttgatgtcttgaacgaagct |
106 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
29237800 |
tgtgaattatgattgatgacattgttgttgttcttgtacacttacatgaatgtattatttttttttaggcaagccttttgttgatgtcttgaacgaagct |
29237701 |
T |
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| Q |
107 |
ggtgtgctttctggtatcaaggttgacaagggtaccattgagcttgccggaactgatggagaaaccaccactcagggtcttgatggacttggtgcttgtt |
206 |
Q |
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| T |
29237700 |
ggtgtgcttcctggtatcaaggttgacaagggtaccgttgagcttgccggaactgatggagaaaccaccactcagggtcttgatggacttggtgctcgtt |
29237601 |
T |
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| Q |
207 |
gtgctaagtactatgaagctggtgcacgtttcgctaaatggcgtgcagtgcttaaaattggccccaatgagccatctgagcactctatccacgagaatgc |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
29237600 |
gtgctaagtactatgaagctggtgcacgtttcgctaaatggcgtgcagtgcttaaaatcggccccaatgagccatctgagcactctatccacgagaatgc |
29237501 |
T |
|
| Q |
307 |
ctatg |
311 |
Q |
| |
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||||| |
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| T |
29237500 |
ctatg |
29237496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 180
Target Start/End: Complemental strand, 26630142 - 26630045
Alignment:
| Q |
83 |
tttgttgatgtcttgaacgaagctggtgtgctttctggtatcaaggttgacaagggtaccattgagcttgccggaactgatggagaaaccaccactca |
180 |
Q |
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||||| ||||| ||||| ||||||| || ||| |||||||||||||||||||||| ||| |||| |||||||| || | ||||||||||| ||||| |
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| T |
26630142 |
tttgtggatgtgttgaagaaagctggagttcttcctggtatcaaggttgacaagggaaccgttgaacttgccggcacaaacggagaaaccacaactca |
26630045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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