View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21165_low_47 (Length: 309)
Name: NF21165_low_47
Description: NF21165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21165_low_47 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 44084726 - 44085019
Alignment:
| Q |
1 |
aagatgaaagaggtgccaaagaattagattatgacaatacgacaattaaaattcaaattttaatcggaagaagtgtccacatttccaatatgacattgtc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44084726 |
aagatgaaagaggtgccaaagaattagattatgacaatacgacaattaaaattaaaattttaatcggaagaagtgtccacatttccaatatgacattgtc |
44084825 |
T |
|
| Q |
101 |
tcgactagattatatccggtggagggaaaaagaaacagaaatgagtctggcat-gtaa--gtaggttattataattaccactcaattctcagccttaaaa |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| || || ||| | ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
44084826 |
tcgactagattatatccggtggagggaaaaagaaacagaaatgagtagggaataataaaccaaagttataataattaccactcaattctcagccttaaaa |
44084925 |
T |
|
| Q |
198 |
atttcaacaaaaagttaaaattcttttataaacttgccaaacaaactttatataacttgcatgatcaaacaaatagaagaaccaattaagtatt |
291 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
44084926 |
atttcaacaaaatgttaaaattcttttataaactttccaaacaaatattatataacttgcataatcaaacaaatagaagaaccaattaagtatt |
44085019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University